GgaINT0136538 @ galGal4
Intron Retention
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4776990-4779985:+
Coord C1 exon
chr23:4776990-4777178
Coord A exon
chr23:4777179-4779811
Coord C2 exon
chr23:4779812-4779985
Length
2633 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GTCGCATCCGTCTCTTGCAGTGG
3' ss Score
7.4
Exon sequences
Seq C1 exon
TTGTAAACTGTACTGACCCCGGGCACCTGGAAAACAGCATCCGTCAAGTGCAGCCGAGTGGTCCTCACAGATTCAGCTTTGGAACAACTGTCTCATATCAGTGCAGCCATGGATATTACTTACTGGGTACACACGTCCTTACCTGTCAGGGGGATGGCACTTGGGACCGTGCCCTCCCACAGTGTCTTT
Seq A exon
GTAAGTTCTTCACATTAATACCATTCACTCAGGGCTTCCAGTCCTGCTCCACAAACCTGCCATGCATTTTCATTCCATGCAGCTCTCTTGGTGCTCACTTGGCTGAAAGCTCTTGTAAAAAGTCTGAACCCAGAGCCCTTTCTAATCCATGGGAATGTTTCTGGCCTCTGGGTCCTGCCCACAGGAGGAAAAGAAGAGGTTTGAGGACAGAAATCTTTTCAGACAGAGATTGTTTCCCTCTGCAGGGGAGGCAGCTCACACTGAGTTCTCCTGGCTCCGTTTGGCTTCAGCAGAAATGCTGTGGGTAGAGAAGAGAAACGTCATTTCTGAAACACAGACCTTCATAGGGAACAGCATGAATTAGCCCGACCAAGGACAGAGTGTATTTAGCATCAGTGGGGCATGGCTGAGCTTCCCTCCACCCACTCATCCCCATGGCTTCAGGGAAGGGAAATGGCACTGTGGTGAAACACACCTGAACTTTGTTCTGCTGCACAGCAGGTGGTAAAGAGGCTGTTTATTGTTCCTTTACATTTTTTGGCCTTTCTTAAAGTGTCCTGGCCCTGTGTGCCACTGTGGTTTGCAGAGTGAACTGGGAGGTTCAGGGCAGTGATTCTGGCTTAAGGGATGTTTCCAATAGCATAGAGGACTTACAGAATGCTCACATGGGTCATGTGCTGCAGTAGTAATGCCTCACCCAGGAGCAGTCCCAGCACTGAATGGAAGATGGCGGTGGGATTGCCCCCAGCACATCATGCTGGCCCTGCAGGACAGGCTCAGCTCTGCCCCCAGTGTTAGCAGCCAGGGGGTTTGGCCCAAGGAGCAGTGCAGGTGACACCCACACGCCCAAGGCAGAGCATGGGGAGCTTTCCTGGGATATGAAAGGCATCCGGGAGGAAATTGAAGTGTTTTATGGGGTTGGGTTTTGCCTTGCAAGCAGGCAAAAAAACCCAACAGCCAGAACAGAGATGTGGGGCTGTGCTGGTATTTCCTTCTTAGAGACTAAAGCAGCTGTGATCTTCTGTCACCCAGCATAACAAATCACTAAAGCAGTCAGAAATGGAGCTTCTTAAGTTTGAATCAGCTGAGCTGTTCCAAAGCCACCACCAGATCCTTTTCTCTTGTTCCATCCTCTGACACCAAGTTATAAGCAGTAGACTTTGGCACATTTTCCTTTGCTTTTGTTAGCAGCATACCACCTTCTCGTGTTTACAGCACCCTGCACAGGCCGTGGGGAACTGACAAGTGATAACCACGTGTTAACACAGCTGCAGGGGCTCCGGGTGAGCTGTTGCCTTTACAAACCAAGAGTGCTTCCTCGGGCTGCTCCAGCCCACAGCTGCTCAGCTGAGTAACAGGGATCTCCTTCCCTAAAATGCTGAACATCCATTGATTTGGAGGATTTGTGGGGACTTTGGAAACCCAGGTCAGTTCTACAACTGATATCTGGATTCTGTAGGCAAAATAGCTTGGAGAGATTTTTGCATGTGTCTGTTTTCTGTGTGTCCAAGTTAGGATGTGCTCAGTGCTGAAACCCGGATTCCTTCCAAGTGTTTATAGTTGGGAACCCAAAATTAGTGGGGACTTCCTAAAACAGAAGCCCAGAGGCTTGATGCTGGAGAGGCTTGTGCTGGGAATCTTGTCTCATGCCTCGTTTGAGGGGGAATAAAGCAGAGCTGATCTCCTTTGAGGGGGGGGAGAGAAGTCCAGGAAGGAAAGCACATGGGAGCCGAGCCCAGCACATCAGAAGGAGCGGTCTTCCTGCTGTGTACATAAATCCCTTCAAAACCTCGATACTGCCACAGGTTTTAAGCTTAGCTGAGTCTGCCAGAGTATCTGTTATTAAATTGTTAGTTACAGTGTGAGTTTAAGTATTAGCTATCAAACCCATTTCTTTGCAAAGCGTCCTTGGTTTTAGTCACAGCTCTGCACCAATATATTTCAACGCCCACATGCCCAAACAGAAGCGTGCTCTCCTTTTATTGAGGCATACATCATGTTTTCTACCTAATGCCAGTATTTGTATTTTTAGACTCTAGCAGAGGGAGAGAACATATCCGTTACGGATGCTTTCCTTCAGCAGCCGAGCGATGCGTGGTCTTTAGGCTGAGAATGCTCATCCAGACCTGTCTAATAGCCCCTAGATCTGTCGGTATATTTGTCAACACCCTCGCTGTCTCCACTTTGATTGCCAAGCTAAAGTAAACCTATTAATTATTGTTAGCGGTGCTTCTTTACCGGCGATGGCTGAGCGAGCAGCGCTCCGAATCCGCCAGGATAATTTGCTCAGGTGTGACACAGCATCGATTACAGCTCTGTGCTGCCGGGACAGGGCGGGGGTGAGGATGTGCATGGAATGGTTTGAGGTTGAGAAGGGTTCTCTGAGGAATGTGCAGATGCCTGTCGGTGTTGGGGCAAGGCACCGACGTGCAGACCCTCAGCAGGGTCTGTGCCCCGCCTGATGTGCCCTCAGAAGGAGGCGATGCAGTGCGAGCCCATCCCTGGGGCTGGGCACCGCTGTTTGGTGGGCAGCTCTGGAGCCGCTGTGTGGGTGTGAGCTGCCGAAGTGCCAGCAGGCAGCCCCAACCAGGCGGTTCACTCGTGGCTGAGCCTGTCGCATCCGTCTCTTGCAG
Seq C2 exon
TGGTCTCCTGTGGGCACCCGGGCTCCCCACCCCACGCTCAGATCTCAGGTGACAAATACACCGTCGGCTCCGTGGTCCGCTACAGCTGCCTGGGGAAGCGGGCTCTGATGGGCAACTCCACGCGCATGTGCCAGCTGGACGGGCGCTGGAGCGGCTCCCTGCCGCACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602:ENSGALT00000004092:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]