GgaINT0137493 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4678088-4678754:-
Coord C1 exon
chr23:4678610-4678754
Coord A exon
chr23:4678207-4678609
Coord C2 exon
chr23:4678088-4678206
Length
403 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTGTTTTTAATATAACAGAAG
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCTAGTACTCAGACAGATGCCCTAAAACTGCCATCTTCACAGCCACCTAGGCTCCTAAAAAACAAAGCATTGTTGTGCAAGCCAATCACGCAGACTAAGGCCACCTCATGCAAACCTCATACACAAAATAAAGAATGCCAGACAG
Seq A exon
GTATGTATTTAATCTCCAACCCATTGTATAGAAGTCTGTAGTGCAGTTGGGAGTGCATGATTTATGCAATAGGCTGTTATTTTTCAGTAGTCTCTTATGGTCTTCTACTTAGCTGTGAGATGACTGCAATAGCATTTACTTGGCTGCAGACCTTAGCATTTATTTCCTCTCCCTTCCCTTCCACCATTCATGTATTTGGTCACTGTGCTGCTTATTTCCAAACTGTTCTATCACTGCTTGTTCCAGCAGTGCTAAAGTGCAAGGTGACTGTGAGCACAGATGTGCCCATTGAATTACAAGCAGAAGTCACTAGTAGTGGAATACCAAACAATTATGATGGACAGTCTGAAGTGTATGACGATCATATGGTCAAACATTTTTTGTTTTGTTTTTAATATAACAG
Seq C2 exon
AAGAAGAAGAAGTTCAACCCAAAATCATTGTGGTACCTGTTCCTGTACCAGTGTTTGTGCCAGTACCCCTTCACCTCTACACTCAGTACACACCAGTTCCGCTTGGGATGCCAGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTACTCAGACAGATGCCC
R:
GTACTGGCATCCCAAGCGGAA
Band lengths:
262-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]