GgaINT0137493 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4308488-4309154:-
Coord C1 exon
chr23:4309010-4309154
Coord A exon
chr23:4308607-4309009
Coord C2 exon
chr23:4308488-4308606
Length
403 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTGTTTTTAATATAACAGAAG
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCTAGTACTCAGACAGATGCCCTAAAACTGCCATCTTCACAGCCACCTAGGCTCCTAAAAAACAAAGCATTGTTGTGCAAGCCAATCACGCAGACTAAGGCCACCTCATGCAAACCTCATACACAAAATAAAGAATGCCAGACAG
Seq A exon
GTATGTATTTAATCTCCAACCCATTGTATAGAAGTCTGTAGTGCAGTTGGGAGTGCATGATTTATGCAATAGGCTGTTATTTTTCAGTAGTCTCTTATGGTCTTCTACTTAGCTGTGAGATGACTGCAATAGCATTTACTTGGCTGCAGACCTTAGCATTTATTTCCTCTCCCTTCCCTTCCACCATTCATGTATTTGGTCACTGTGCTGCTTATTTCCAAACTGTTCTATCACTGCTTGTTCCAGCAGTGCTAAAGTGCAAGGTGACTGTGAGCACAGATGTGCCCATTGAATTACAAGCAGAAGTCACTAGTAGTGGAATACCAAACAATTATGATGGACAGTCTGAAGTGTATGACGATCATATGGTCAAACATTTTTTGTTTTGTTTTTAATATAACAG
Seq C2 exon
AAGAAGAAGAAGTTCAACCCAAAATCATTGTGGTACCTGTTCCTGTACCAGTGTTTGTGCCAGTACCCCTTCACCTCTACACTCAGTACACACCAGTTCCGCTTGGGATGCCAGTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGTACTCAGACAGATGCCC
R:
GTACTGGCATCCCAAGCGGAA
Band lengths:
262-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]