RnoINT0169165 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144910322-144913450:-
Coord C1 exon
chr5:144913306-144913450
Coord A exon
chr5:144910438-144913305
Coord C2 exon
chr5:144910322-144910437
Length
2868 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGTGCTTTTTTCATTAGAAGACA
3' ss Score
3.2
Exon sequences
Seq C1 exon
GCAAGTACTCAAACAGATGCCCTGAAACTTCCACCTTCCCAGCCTCCAAGGCTTTTGAAGAACAAAGCTTTATTGTGCAAACCCATCACACAGACTAAAGCCACCTCATGCAAACCACATACTCAAAACAAAGAATGCCAGACAG
Seq A exon
GTATGGTACTTTATTTAGGGCAAGGGAATGGAGCATCTGATTACTTCGAGTACACTGTTTCCTGCTTATATGGCTTGTCCAGTGCAGTTTGTACAGTTTGTCTGTGAATATAAGGTATTTCTCTATCTGAGGCTTTTAATAAGTTAGCTCAAATAAAAGTTAATTCATATCATACTGTGAACACAGTTAACGTTTGTTAGTAACTAATGTTGTAGGCTTAGTATAAGCTTTAGAATAATGCAGACAGGATTTGAAGTCAGAGATGCATTAGTTTTTAATGTGCTATTACGTTTCTGTAAATGGATATTATCTTATTTTCTCCTTTGTGTATGTGTTCACTTAGTGGTATGTCTATAGCTCTGTGCTTCCTACATGTAACATCTATCCCTGTCCCCTATTGTTTTAGAAAGTCACTTGCATTGGTGGTGGTGGCAGGACACATCTTTAATCCCAGCACTCGGGGCAGAGGCAGGTGCATCTCTAAGTTTGAAGCTGGCCTGGTCTACAGACTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGTCTCCCCCCCCCCCCCCAAAAAAAAAAGTTAGTTGCACTAAAGGTGGTGGTGCATACCTTCAGTCTTAGCATTTATGAGGAAGCAGGCAGAGCTCCGAGTTTGAGGCCAGCCTAGTCTACAGCTGCTCTATAAATTATCTGAGGTAGGGTGATAAGGATCCCAGTGCTCTTCGCCTGTCAGTTTTTGGGTACAACCTCCATCTTGTGAATGAAAGCTGATTGGAGCATGAGCTTCTTCTTGGCCACACACATCAGGAATTTACCTCGAGTGAGAAATGTTCAGGACCTACCCCTCTTTCAGAGTTTTTGTTACTTTTTAATACTTTATGTGTGTGAGTACCTTGCTTACATGTATATATGTTTAATGTGTTCACATACCTGGTGTGCATGGAAGTCAAAACGGCTTTGGATCCTCTCTGAAAGGAATTAGAGTCATGTGGGTATTGTGATTTAAATCTGAGCAACAAGTGTGTTTAACTGCTAAACCTTCTCTCCGGCCCTTCCTAGTGAGTTTTAAAAGCTCTAATTGGGAGTTGAGAGGACAGAGAAGTCCATTCATTCTTGACATAGCCACTCAGAATTTTTCAAATTGTGCTAAGCTGAGCGTAAGTGCTAGAGCAGGTAGAAATAGTGGTTTTGAAGAAATATTTCTATTTGTTCTCACACTCAAGGCAGTTGCCCAAGAATCGCTCTTTCACAGTCTTCATCTCCTTTGTTTGCTTGTATTTAGTTTTTTTGCTGCCAACCATAAGTTCCAGGATTCTTAAACTAGAAAAGAATCCTAGACGCAAAGCTGTCATCCTGATGCTGTTGACCCTGAATAACATGTACACAAATTACCTGTGATCTACGTAGGAGCTGGAGTTGAAGACTCAGTCTTTGTCTTACAGTATGGGCATGCATGTGTCGTGGTGAGCATATCGACGTCAGAGGATGACAACTTAGTTGGTTCCTGGGAATTCTCATCATATTTTTTGAAGTACCTTCTTATTATTTTCTACAATGGCTATAGTAATTCATGGTGCCCACCAGGAATGTTAGAAAGTCCCCTTTCTCTGTGCTTACCGGGATTTTTCCCCTTCTTTTTTGATAGTAATCATTCTCAAAGGGATGAGATAATATTTTATTTTTTCAAATTTATTTTTATTTATATGTATGTGTGCCTTTTTGCCCATATGTACACCAGGTACATGCAAGTGTCCACAGAAACCAGAAGAAGGCATTGAGTTCTCTGTAACTCAACTTACAGGTATTTTTGAACCCCCTAATATAGGTGCTGGGAACTAAACCCAGGTCTTTTGTAAGAGCAGCAAGTGTACTTCTCTGCCGAGCCGTCTTCTCTAGCCCTGTCATTATAATTTTGATAGGTATTTCTCTGGTGATCATTATTAACATTGAATATTTTTATTGGCAGAGTCACTGTTTGTCATTATAATAAAATACCCAAGGCAGATAATTTAAACAGAAAAAGTTTGTTTAGCACCTAGTTTTGGAGGTTGTCACACAATGTTTGGAGATGCAATTTCTTGGCTCTTGTTACCCTGTAGTGTGGGTAACATAGATGTGAAAATCTTTGGGAACAAGCAATTGACTCCTTTACCAAGAACATATCAGCTAATACCCTAGACTTCCTAATGAGAGTATGGTCCTTCCTCTCCTTGACCTAAGGTTCTTCTAAACGTTGTACCATTAACCAGCCACACCATGTGGACAAAGTGAGACCATTGGCCACTTATAAGTCAGTTTATTTAGTTTTCTTGCCGTTTACTTGTTTCTTCTGTATTCTAGATAATAACCCTTTGTTAGATAGATAGTTTGCAAATATTTTTTGCCATTCTGTAATTTTTCTCTTAGCTCCTGGATTGCTTTTGTATATAACATTTTTAATTTGTAGTTTCTCTGGCCAGATATATTTTGTTGTTTTTATTCTTGGGATCATACCTTTAAAATAAAAATTTTTTTTCTCAGAGCAATATACTGAATTTTTTTATTATCTAATACTTTAATTATTTTGCTTGCTTTGCTTTAAAATTTCTGATTTACTTGGATTTTTTTTTCTCCTTTTTTTGTCTTGTCTTTTTTTTCTCCCAAATTTAGTTTTTTGAGATAGGGTTTCTCTGTTTAGCTCTGTGTGTTCCTGAAACTCACTATGTAGACCAACACATGCCTCAAACCTGGAGATCCATTTGCCTCTGCCCCCCAAGTGCTGGGATTAAAGATGTATCACCACTGCTTGGCCCAAATTCTCCTCTTTTGAGATGGAATTTCACTAAGTTGTTTCTAACCCATTTCTTCTGTCTGTGCTTTTTTCATTAGAAG
Seq C2 exon
ACACTCCAAGTGAGCCCCAGGTTATGGTGGTGCCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAGTACACTCCTGTCCCCTTTGGGATTCCAGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]