DreINT0181033 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40508407-40509506:+
Coord C1 exon
chr19:40508407-40508551
Coord A exon
chr19:40508552-40509399
Coord C2 exon
chr19:40509400-40509506
Length
848 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TGTGTTTTTTTGTTTTTTAGAAG
3' ss Score
10.11
Exon sequences
Seq C1 exon
ACGGCCAGCACACAGACAGACAGTGTGAAGCCTTCTGCTCCTCCACCTCGAATCCTGAAAAACAAAGCCTTACTGTGTAAACCCTTAAGCCAGAACAAGGGCACTTCCTGCAAACCCAATGTCTGTGACATGGATTCACAAACAG
Seq A exon
GTACTTGGAAGTACATGTTTCTAGTGAGCATTGCATATATTGACACTTGGATGACATGGAAAAATAATGAATTGTATGAAACACAACCTGGACTTTCTAACAGATTTCTAATACATTTCATATTGGACAAACAAGGCTAACTCATGTTTTTTGCTTAAAGGGTGAAGATTACACTCATTGTTTGTTCTGCAAAATTAATATCACTGTAAAACACGTTCTGTTGGATGGTTCTGCTTTTAATGACTGCAGAAGGCTTTTTCATTAAATGAACTTACTCGAGACATTCAGCAAAGTGTCAGCAGGAACAATTTTACAATTTTTATAATATTCATTTTCCTTAAGCTTAGTCCCTTATTTATCAGGGGTCGCCACAGCAGAATGAACTACCAACTATACCAGCATATGTTTTACACAGCGGTTGCGTCCTTCCAGCCGCAACCCAGTACTGGCACAGTGCTAACCACTGAGCTGCTGTGCCTCCAATTTTATTATATATTATATATTGCTGTAAATGTACAGTTGAAGTCAGAATTATTAGCCCTGCTGAATTATTAGCCCCCCTGTTTAACTTTTTCTTTTTATTGTTAAAAACTGCTTTTGATTCTAGCCGAAATGAAACGAATAAGACTTCTTCCAGAAGAAAAAAGATTGTCAGACAAACTGTGAAAAATTCCTTGCTCTGTTCAACATCATTTAGGAAATATTTAAAAACAAAAACAAAGGGGAGCGAATAATTCTGACTTTAACTGTATGTGTTAATTTGTGGTTTTTAATTGTAGATAAGTAATGAAATCTTTTTGTCATAAAAATAGTATATCATATGACAGATGTGTTTTTTTGTTTTTTAG
Seq C2 exon
AAGGACCTGCTGTTATAGTGCTTCCTGTGCCGGTGCCCATTTATGTTCCTGTTCCTATGAGTCTCTACACTCAGTACACGCCAAAATCTGTAGGCTTGCCACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACACAGACAGACAGTG
R:
GCAGTGGCAAGCCTACAGATT
Band lengths:
246-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]