GgaINT0137494 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4307974-4308606:-
Coord C1 exon
chr23:4308488-4308606
Coord A exon
chr23:4308146-4308487
Coord C2 exon
chr23:4307974-4308145
Length
342 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATTTCTGCATGTCTGTATAGGTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
AAGAAGAAGAAGTTCAACCCAAAATCATTGTGGTACCTGTTCCTGTACCAGTGTTTGTGCCAGTACCCCTTCACCTCTACACTCAGTACACACCAGTTCCGCTTGGGATGCCAGTACCT
Seq A exon
GTAAGTTATACTCAAGTTCACTGAGGAACTGGTTTTCAGTTTTTGTTCTGATCAAGAGCCATGTGATTGGGTTTTCTGATGAGTCATGTGAGTGGTATTTGGAGTCTATGAAGCCATTTCTTTCCTTATCACGTTACGCTTTGTTAAAGCTTCACTATGTAAAAACACCAGTTTGGGGGGTTATTGCAGAAATGAAAAGGGCTTTCTGTTCTGGAATTATGTAAAATTATGTGTATCCCTGAAAGTGTGTAAGTAAGATTAAATAAGTAGAATCTCCCTGGTGTGTTTGCTGCTTCCCTTCATCCCCAAACAATCTCTAATAATTTCTGCATGTCTGTATAG
Seq C2 exon
GTACCCGTTCCCATGCTTTTCCCAACTACTTTGGATAATGCTGATAAGATCCTTGAAACAATTCAGGATATCAAAGAAAAGATTCCCATAAGTCCATTTGAAGCAGATCTCCTTCAGATGGCAGAAATGATTGCAGAAGATGAGGAGAAAGACAAAACACACTCTCATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGAAGTTCAACCCAAAATCA
R:
CACCATGAGAGTGTGTTTTGTCT
Band lengths:
290-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]