RnoINT0169166 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144907590-144910437:-
Coord C1 exon
chr5:144910322-144910437
Coord A exon
chr5:144907762-144910321
Coord C2 exon
chr5:144907590-144907761
Length
2560 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
TTCAGTCCTTGTTCTTTCAGATG
3' ss Score
10.33
Exon sequences
Seq C1 exon
ACACTCCAAGTGAGCCCCAGGTTATGGTGGTGCCAGTCCCTGTGCCAGTGTTTGTTCCCATACCTCTTCATCTTTACACCCAGTACACTCCTGTCCCCTTTGGGATTCCAGTTCCC
Seq A exon
GTGAGTAATCATTGAGAGGTTAAATCTAATGCAGCTTGTGTTTTCTCATTTTAAATTTTACAGCTGTGTAATAAGATGTCATAATTGTTGGTGAAAGTATACCTGTTCCTGATTGGCTGCTGTTACATTGCCTTTGTTATTTATTTCAGAGAATGTAGACATTTTCCTTTGCTCACACCTTATCTTCTGAAAGAGTGTTGATAAAGCACAGTGGCTCACACCTGTAATCCCAGTACTTGTGAGGAAGGAGGATTTCGGCCAGTCGAAGGTTAGGCTGGGCTCCTGTGTGCTCCAGCCAGTCTTGACTGCAGTGAGACTTTGCCTCAACAAAACACAAACAAGGACTGGAGAGTCAGAGGACCTGGGTTTGAGTCATAGCACCCATACAGTGGCTCTCCTGTTTGTAACTCCAGTTCTAGGAGATCTGCTGCCTTCCTCTGACTTCTGTGGTTACCAGACATGCATGTGGTACACAGACATACATACATATACAGTGGCTCTCCTGTTTGTAACTCCAGTTCTAGGAGATCTGCTGCCTTCCTCTGACTTCTGTGGTTACCAGACATGCATGTGGTACACAGACATACATACATGTAGGGGAAACACTGAAGTCTGAAAGTTAAAGAAAAAGTTAGTTTTGAGATCACTCAAATAGAAAATAAAAAATCAAAACTACATGTTAGAATTCTGAATTCTGGGCCAGCAAGATGGTAATGGTGCTTGCTTGCTAGCCTGATGATCTGAATTCAGTCCCTAGGACCTACATAAAGATAGAAGGATCAAAGTGACTTCATACATTGTCCTCTGACTATGGCAAATATATCCACCCAAAGAACATACTAAAATGCAATAACACTACTAATAATAGTACTACTGCTAATAATAATGACAAAACAAATATTAAGAATCCCTACCTGTGGGCTGGAGAGATGGCTCAGCGTTTAAGAGCACCCGATTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGCTGTGTCTGAAGACAGCTACAGTGTATTTATATATAATAAATGAATAAATAAATCTTATTTTAAAAAAAAGAGAATCCCTACCTGTAGCAGAAGTAAAAGAAGATTCCTGTCATACTTTCTTTTAAATATATTGACAATTTATGTTGTAGGATTATTCTTTTGAAGGATTCAGAAGCTCTTTGTTAAGTGTCTAGAAAAGTAATTAGTAGTTGTGTTGTGGTTTTTTTTTTTTTTTTTTTTTTTTAATTATTTTTGGTTTTCAGACAGTGTCACTAGGTAGCCCTGGCTGGTTGCAGAATGTACTCTATAGACCAGGATTGACTTCGAACTTGTAGAGGTCCACCTGCCTCTCCCTTCCACTCTGTTGGTTTTAAGGGCATGTGGCACCATGTGCACTTGCTTACTATCTCCCTTCCTCCTTCCTTCCCTTCCTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCTCTTCCTTCCTTCCTTCCTTCTTGTTTTTTGGGTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTGTTTTTTGAGGCAGGGTTTCTTTGTGTATCCCTGGGTATCCTGGAACTCTCTCTGTAGACCAGGTTGGCCTTGAACTCACAGAGTTCCACCTGCCTCTGCCTTTAATGTGCTGGTATTAAAGATGTGTACCATGACACCTGGCTTAGATTTTTATTTTAATCATTCAGGTCTAATGAAAACGAACTACCAAGACTCATAATTTTATCAATGAGAATATTCCCCCCCCCCACACACACACATTATTTTAGCACTTGTATATCATTATACAGATTCTGACAAGAAATCTATTGTGTAAGAAACCCTCAGGCCAGGGAGATGGCATACTTAGCATAATACTTACTGTGCAGGGCTGGAGAGATGCTCAGTGGTTAAGAGCACTGTCTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGACTCACAGCCATCTGTAATGGGATCTGATGCCCTCTTCTGGCCTGCACGTGTACATGTATACATAATAAATCTTTTTTTTTTTTTTTTTTAAAAAGAGCACTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACACAGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTATACTTAAATATAATAAATAAAAAAAACCTTAAAAAAAAATAAAGTGCTTTACCGTATTTAAAAAAAATTACTGTGCAAACATCAAGCTCTGAATTCATTGTCCAGGATTGATATAAGAATCAGGCATACTGCGACACCTATAATCCCCGTGTCTGAATGTCAGAGACAGGAAGATTGTTGGAGTTTGCTGGCCAGCCAGTTTAGCCAGTCTGCAGTTTCTGTGTTGAAGAAGATACCCGCTGTGGACCTCTGTGACACACACATGCATGCACATGCACATGCACGCACACACCCCCCACAGGAAACATAAGAAACCTTCAGTCCTTGTTCTTTCAG
Seq C2 exon
ATGCCTGTTCCCATGTTTATTCCATCCTCTATGAACAATGAAGAGAAAGCCTCTGAGGGCATTGAAGACATTAAAGAGAAACTTGCCACACATCCATTTGAGGCAGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGGAAAAGACTTTATCCCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]