HsaINT0186032 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35862153-35863146:+
Coord C1 exon
chr1:35862153-35862271
Coord A exon
chr1:35862272-35862977
Coord C2 exon
chr1:35862978-35863146
Length
706 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GTCTATCCTTGGTCTTTCAGATG
3' ss Score
10.25
Exon sequences
Seq C1 exon
AAGACACTCCAAGTCAGCCCCAGATTATTGTGGTGCCAGTTCCCGTACCAGTGTTTGTTCCCATACCTCTTCACCTTTATACTCAATATGCTCCAGTCCCATTTGGAATTCCAGTTCCA
Seq A exon
GTGAGTAATCATTTAGAGATTAAAGCTAATATAGCATGCATTTTCCTCAATTAAAACTGTATAGTTCTGTGAAGAAAGTTTTCATTTGTTAGTAAAATATACCTGCTTCTGATTGGCTGTTATCATATTCCCATTATTACTTAACATGGATTATATAAATGACTGCTTTTATTTGTACCCTTCCTTCTCAGAAAAGGTTATGATGTAGCTTTTTAAAAAACTTACATGCACAATAAGACCACTCAAATAGAAAAAGATCAGAAATGGTGTATGTTGAAATCCTGGATTCTAGCAAGGGTGAAAAGAGTACTGTGATTTATATAATTCTCATTTTTGATTAAAGAAAAATGTATTTTTTAATTACAAATTTATTTTTCCCAGGTACTGAGTCCTTAAAGGAAACAGTTATGAGAAAATTGTGAGAAATACAAGCAAAAACAACAAAAACAAAATGCAAGTGTATTATAGAATTATTCTTTTAGAGGATTCAGAGACATAATTGGTTGAGTGTCCAAAGCACTTATTGAAATTTTATTTAAATGGCTCTAGTCTTATAAAAACAAACTAGCAAGACTATTTTAATCATCAGCAATGAATATACCTTAAATTTGTTTACTATTTTAATACCTAAATCATCTCACAAATCATACTTTTGGCTACAAACCTGTTGCCAAAGAAAGCCTTCAGTCTATCCTTGGTCTTTCAG
Seq C2 exon
ATGCCTGTCCCTATGCTTATTCCATCTTCAATGGATAGTGAAGATAAAGTCACAGAGAGTATTGAAGACATTAAAGAAAAGCTTCCCACACATCCATTTGAAGCTGATCTCCTTGAGATGGCAGAAATGATTGCAGAAGATGAAGAGAAGAAGACTCTATCTCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACACTCCAAGTCAGCCCC
R:
TCCCTGAGATAGAGTCTTCTTCTCT
Band lengths:
287-993
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)