GgaINT0137497 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4306385-4307168:-
Coord C1 exon
chr23:4306989-4307168
Coord A exon
chr23:4306480-4306988
Coord C2 exon
chr23:4306385-4306479
Length
509 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGGTGTTGATTTGACTTCAGACT
3' ss Score
3.5
Exon sequences
Seq C1 exon
ACCAAGGTAGCACTTACAGTGGAGATCTAGAATCAGAAGCAGTGTCCACTCCACACAGCTGGGAAGAAGAGTTAAATCACTATGCCTTACGATCAAATGCCCTGCCAGAACCAGATCCAGAACCGAAGCAGATCTCCAAAGGTGAAGTGGAACAGGACCTGGAAGCAGATTTTCCGTCAG
Seq A exon
GTCTGTATAACACTAGGAAGAGTTCATTGCTGTATAAAAACACACACAACTTTGAGTGAGTGTTGGAGCCACTTAAGAGGGGTATATGTTTTCATTCAGTTAAACAGGATATTTAAAGCAGCAGCAATATGTCCGCTCTACTAAAAATTACTGTTTTTAAAATATTATTGGTATCTTTACAGACAGCATTTTACAGAACCACTGTCAAGAGTAGCACATATTCTTGCCTGACTCCCTTCAGTGTATCATTTTTGTGTTCCTAGGTATAATCCGTGTTAGTGGTGCAAAAGAATAGCAGTTTGTCTGAATGAATGCATCCACTGTTTGGGGGTGGGGTTTTTTTCCTCTTCTGAGTACATTTATTGCCCAGTTGTTCAGACATAAAGTATTATTTGAATATACAGATGTGATTGGCGTCGCTAGGGTACTTGGTATTTTTAAGTGACACTTCTTCTCGGGCTTGTTAAATCATATAATTTAAATTCTTAATGGTGTTGATTTGACTTCAG
Seq C2 exon
ACTCATTTGACCCTCTCAGTAAGGGACTGGGTTTGCATTCACGTTCACGAGCAAGACGGAGGCACAGAGATGGCTTCCCCCAGCCAAAGAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTACAGTGGAGATCTAGAATCA
R:
GTCTCTTTGGCTGGGGGAAG
Band lengths:
263-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]