RnoINT0169170 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144904225-144904898:-
Coord C1 exon
chr5:144904719-144904898
Coord A exon
chr5:144904320-144904718
Coord C2 exon
chr5:144904225-144904319
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CTTTCTGCTGGTTTTTACAGAAT
3' ss Score
9.59
Exon sequences
Seq C1 exon
ACCAAGGAAGTACGTATAGTGGTGACCTCGAGTCCGAGGCAGTATCAACCCCACATAGCTGGGAAGAAGAACTGAATCATTACGCCTTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACAGTTCTCCAAAGGGGAAACAGAACAGGATCTGGAGGCAGATTTTCCATCAG
Seq A exon
GTTTGTATAGCTTAGACCACTGAGGGTCATCTATTTCAGAGGATTGGGGGTGCTCCAAGTTTGAATTATTAGGCAGTTGTGAAGTGTTAGGGTTTATTTAGGGCACAAGAGTTTTCTCCCTTTATAGATGAGAATATCTATTACAAGGTTATTGTAAGTGGTGAATTTGATTGTTTGTAATTTTTAAAGACCTTTTCAACAGCATCAGTTTATGGATGTTTCCTTGCTAAAGACCGTTTCATTCGTATGTTAAAATCCTTTGTTTGTGTATCTTAAATATATAAGAGAAGTTCTTTTATCACAATGACTAGAGTGAGGATTAATAATACTTGTCTTCTGGTTTCTCTTTACGCCTGTGTGTTGCATAACTCACATTGTGCTTTCTGCTGGTTTTTACAG
Seq C2 exon
AATCTTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCGCGTTCTCGAACAAGACGAAGACACAGAGATGGCTTCCCCCAGCCCAGACGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGGAAGTACGTATAGTGGTGA
R:
CGTCTGGGCTGGGGGAAG
Band lengths:
271-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]