DreINT0181037 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40514712-40515340:+
Coord C1 exon
chr19:40514712-40514924
Coord A exon
chr19:40514925-40515242
Coord C2 exon
chr19:40515243-40515340
Length
318 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TTGTTTGTTTTATATTTCAGAGA
3' ss Score
10.01
Exon sequences
Seq C1 exon
ATCAGCCTGTACACATAATGGAGGACCTTGATCTGGAAGCCCTGTCCAGTAATCTGAGCTGGGAGGAAGACTCTGTGTCTTCTGCTCAGACATGGGATCAAGCTCCAGAGCCGGAGCGTTTTCTTCCTCCTCCGTCCAGATCTGCCACAGTTACTCCCGTCTCCAGCACAGCAGAGGAGCCACAGATGGACCTGGAGGCAGATTTCCCAATCG
Seq A exon
GTAAGAGCTTCTGCTGAAGTTAAGAGTTCACAAATACAGTCAAAGCTGTTAATTTAGGGTAATTAGGCAAGTCATTGTATAATGATGGCTGTTCTGTAGACAATCCCAAACAAATACTTAAGAGGGCTAGTAATATTGACCTTAAAATAGCTTTTAAAAACTGCTTTTATTTAAATAAAAAAGATAAATTTAATTACATTTTCTTATTTTTATTTATTTATTTTTTATTTTTGGGAAATATTTAAAAAAGAAAAAAAAATTCACAGGAGGGCGAATAATTTTGACTTCAGCTGTATATTTGTTTGTTTTATATTTCAG
Seq C2 exon
AGAGCATTGAACTCTTCAGAGAACAAACGCCAAATAAGACAACAGGCAAACGGAAATCTCGCAAGAGAGCACGCGATGGCTTTCCTCAGAAGAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTGTACACATAATGGAGGA
R:
CCGTTTCTTCTGAGGAAAGCCA
Band lengths:
310-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]