HsaINT0186036 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35864465-35865177:+
Coord C1 exon
chr1:35864465-35864644
Coord A exon
chr1:35864645-35865082
Coord C2 exon
chr1:35865083-35865177
Length
438 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CTTTCTGCTGATTATTATAGACT
3' ss Score
6.35
Exon sequences
Seq C1 exon
ACCAAGGAAGTACATACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAGCTGAATCACTATGCCTTAAAGTCAAATGCTGTGCAAGAGGCTGATTCAGAATTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGACCTGGAAGCAGATTTTCCATCAG
Seq A exon
GTTTGTGTACAGTAACCTGTCCACTGAAAGCTTTTTATTTTAAAAGATCGGTACAACTCTGAATTGACACTATTAAGCAGTGCCAATTGTTATTGATAATAACAGTGTAATGTGTTAGAGGTCATAATCTAGAGCACAAATAGACCCTGGCTTTGTAGGTGTTAATTCGTACCATATTGTTCTTATAAGTGGTTAATGTGGTTAAAATTTTTTTTAACCTTTCCCGTAGTAGCTATATAAGAGGTTTTCCTGATTGTTAATGAAGTTTTCATTTATGCACTATATCCTTGGTTTAAGTCTATAAGTGGAATCCTTATTTTATCACAAACAAACTAATGAATATAGTGATGATTACCTGATATTTCTTTACTAGTCTAAGTCTTTATTTAAATTTGTGAGTTATTTACCTCATGTTGTCCTTTCTGCTGATTATTATAG
Seq C2 exon
ACTCCTTTGACCCACTTAATAAAGGACAGGGAATCCAGGCACGTTCCCGAACAAGACGACGACACAGAGATGGCTTCCCCCAACCCAGACGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.880 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGGAAGTACATACAGTGGTG
R:
CTTCGTCTGGGTTGGGGGAAG
Band lengths:
274-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)