GgaINT0138317 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3541244-3543443:-
Coord C1 exon
chr24:3542865-3543443
Coord A exon
chr24:3541818-3542864
Coord C2 exon
chr24:3541244-3541817
Length
1047 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACCAATGCCTTCCCTTGCAGGTG
3' ss Score
12.14
Exon sequences
Seq C1 exon
TGCCCGGAGCACAGCCACTACTCAGTGTGCGCCAGCGGCTGCCCTGCCACATGCTCAGACCTGACAGCCCCACTGCGCTGCACTGCACCCTGCGCCGAGGGCTGTGAGTGTGACGATGGCCATGTGCTGAGCGCCGACCGCTGCATCCCTGTGCAGAAGTGCGGCTGTGATGTGGACGGACGGTACTACGCCGTCGGAGAGGTGTTCTGGGCAACAGCGGACTGCACAGCAGAGTGCCAGTGCGAGGACGGTGGGGAGGCCAAGTGCTTCAACACCAGCTGCCCCGAAGGAGAGGTCTGCACCATTGAGGATGGCTACCGGGGCTGCTACCCAAAGCGGGAGGGCCTGTGCTCGGTGGGACAGAACCAGGTGCTGCGGACGTTTGATGGTGTCACCTTCCCCTACCCGCTGGAGCACTCTTACACACTGCTCAAAACATGCATGGAGAAGCCTGACTTCATTGAGGTGGACATCAGTCAGAAGAAGCCGGGATACGCTCCCAATGGGCTGCGCGTCATGCGGATCCAGGTGGTTGGCCAAGAGGTGAAGGTTGGAGGAGCCAGCCTGTCAGAGGTCAAG
Seq A exon
GTAAGGCTGTCACCAAGATGGGAGGCATCGGCTTGTGCCATGCCACAATGTCCCCATGGAGAAGAGCTTATGGGTGTACAGCTCTGGACTGTTCCTTGAGATCAGAGCCATCACAAGTGTCAAAGTCTACTCATCTCTCATATCCAAGGCAAGAGGTAAAAGGACTAGGATTGCATCCACCCATGGTCCCCATCCCATAGACTTCACAACAGCTGCCAACACTGGTAGGAAGACCATAGGTGCTCACCAAGACCCTGTTCTCACAGCCCAGCTCATGCAAACCCTCCACACCAAAGAGCTAGGGGAAAGCAGAGGATATCTTGTATCTTGGAAGCACTTGTATTTTGCTTGAGGGCAGATTTGCCAGCAGAACTGGTGGTCATAATGTGGCTATAGTGAGCAAAATATCTGTGGAAAAGAAGGAACATCCCAACCTTGAAGGTCTCTGTGCCTTCTGAATCCCAGCCATACCCATTTTTACTCTATTTTGCAGCTGAGGTTTTTCTCTTTGACCAGTCAAGCCAGGACAGCCACAGTAGAGCAGGCAGAATGCTCCATTAAGTGGAACCACAGCTAACATTCCCAGCTATTTCCTATTTGCCAAGCATTTATTAGCAGTGAGCAGCAGTGCAGGATGCAGGAAGGATGCAGTCAAGTGAGGCAGCCCTAAGCTCAAGGCTTCACTGGAAGCATATAGAGCAGTCACCATCATGGTGGAGGAGGAAGGCAATACCATGGTGTCTGTACCATAGGATTTAACATAGGGTTCCATCTGTCCACGGCCATCCTGCCTTGTAGCACTGCTATTCCCATTTACTTGCCAAGCCAAATCAGGAGGCTTTCTGAATGCTGCTGTTTTCTCCTCCAGCTTACTCTTGCTTGAATTTGCTCTGTCTTTGAATGAAATGCAAGGAAATGGCTGCATCCTCCCATGTGATGGAGATTTCCGACCTTCAGGGGCGGAGGCCAGGTTTATCCTTCCTGTCGTGGTGCAGGTGGGACCATCTTGCAGAGTCACATTGCCTTTACCAATGCCTTCCCTTGCAG
Seq C2 exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGCAGTGGCACGCTATGCCAGTGCCTGCAAGAACGCCGAGGTGGACGTTGGCCAGTGGAGGAGCCACAGCTTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=28.0),PF127142=TILa=WD(100=29.0),PF0009420=VWD=PU(49.4=39.4)
A:
NA
C2:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTCTGCACCATTGAGGA
R:
TCAGTGCGGTAGATCTCCAGG
Band lengths:
357-1404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]