HsaINT0165600 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:120998461-121000920:+
Coord C1 exon
chr11:120998461-120999053
Coord A exon
chr11:120999054-121000346
Coord C2 exon
chr11:121000347-121000920
Length
1293 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGAATGACTTGATTTTTCAGTTG
3' ss Score
5.74
Exon sequences
Seq C1 exon
TGTCCACAGTGCAGTGCCCGAGCTTCAGCCACTACTCCGTGTGCACAAGCAGCTGCCCCGACACATGCTCCGACCTGACGGCCTCGCGGAACTGCGCCACGCCGTGCACAGAGGGCTGCGAGTGCAACCAGGGCTTCGTCCTCAGCACCAGCCAGTGCGTCCCTCTGCACAAGTGCGGCTGCGACTTCGACGGCCACTACTACACCATGGGGGAGTTCTTCTGGGCCACGGCCAACTGCACTGTGCAATGCCTGTGCGAGGAGGGCGGGGACGTCTACTGCTTCAACAAGACCTGCGGCAGCGGGGAGGTGTGCGCCGTGGAGGACGGCTACCAGGGCTGCTTCCCCAAGCGGGAGACCGTGTGCCTGCTCAGCCAGAACCAGGTGCTGCACACCTTTGACGGCGCCTCCTACGCCTTCCCCTCCGAGTTCTCCTACACCCTCCTGAAGACCTGCCCTGAGCGCCCAGAGTACTTGGAAATCGACATCAACAAGAAGAAGCCCGATGCAGGACCTGCTTGGCTGCGGGGACTTCGGATCCTGGTGGCCGACCAGGAGGTCAAGATAGGAGGCATCGGGGCTTCGGAAGTCAAG
Seq A exon
GTAAGGCTCCTTGCTCCTTTGGAGGGGTTCCTGGTACGTCCAGCCAGGAGGAGGAGCTCGCCATCCTCTTCAGGTTTGCCTTTCTGCCTCTGCCTATGAGTGGATTTTAGAAAGAAGATGGCTCCAAACGGGAGCGTTTTCTAATGATCTGCACCAAATAAGAATTATCAGGTGGAGAAATGGCATGCAGCTGGGATTTCTCCAATTAGATAGAGCAGGACTAGCTCTCCGGAATAGCAAATACTTACAGAACACTTACTATGTGCCAAGCACTATTCTAAGCCCCTTATAAGCAGTATCACACTTCATCTTATGATCCTCATTTTACAGATGAGAAAGCTGAGGAGCAGAGAGGCTAAGTAACTTCCACAGGGACACCTAACCGTGAAGGGAGATTCACACCTGCCTGGCTGGCTCCAGAATCTGCGCTCTTAACCCTTGCACCCTACTAACTCCCCTACCTATACATGCCAGTCTATGTGGGGTGATGTAAGGGGTGACTCCCACCCCTCTGACTTGCTCTGAAAAACCCATCATTAGGCACCCAGACTTATAGATCCTTAGCTCTAGAAGGAATATTGAGAATTATCTAGTGCAACTCCTCATTTCACATGAAGACACTTACTAAAAGGGTAAGTGAAGGTCCCACAGCTAATTGTTGCAGAACGGGGATGCAACATGCATTTTATGTCACCTGAAGTCTAGTTTGGAAAACAAAAGCCAACACAGTACTGCCCAAGGAGATAATAAAATACGCATCCACAAACTGGAAGGGATGTGTTTTTATTCTCATTGCCACATTGGCAGAGATTTATTTATTAATAGACTAGTAGGAAGTAGATAGAAGAATGGACAGCTAGATCATTAGAGATATGCTATGTGCCCTCGAGGAGCTGGGACACAGAAAAAGTAAGACTGGAAGAGAAAAGCAGCCAGAAAGGCAGGGAAGGAGGGGAGCTATTTTGAAAGGTACCAAAACAGAGATGCCAGGCGGCAGGAGGGAGCCACGTATCTAAGACGATTTTTGCTCACACTTTAGTTTCGTTTGTTTTGGGCTAGCTTTGGGTCCAGAACACACAAATAAACAGCAAATGGGTCTAATCAGGGGAATCCAAAAAGAAATAAATAAAGAAGCCCATGACAAATCGGTTGGTATCTTTGTGGGTTCCATCAGCTTCTTGACCTCTCTCAAAAGGCTAGCAATAGGGCAGACCGTGTCTTTATCCCACAGCCTAGGAAATGGAAAGTGCTCTGTGTGTCTCTGGAATTGATAAGAATGACTTGATTTTTCAG
Seq C2 exon
TTGAATGGTCAGGAAGTGGAATTGCCTTTTTTCCATCCTTCGGGGAAGCTGGAAATTTATCGAAACAAAAACAGTACGACAGTGGAGTCCAAGGGCGTGGTGACTGTCCAGTACTCAGACATAGGTCTATTGTACATCCGGCTGTCCACCACATACTTCAATTGCACAGGGGGCTTGTGCGGCTTCTACAATGCCAACGCCAGTGACGAGTTCTGTCTCCCCAACGGCAAGTGCACGGACAACCTGGCAGTGTTCCTGGAAAGCTGGACAACTTTCGAGGAGATCTGCAATGGAGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCGGAGCTGCTCAAGTTTTATCGAAGCCGCTCCAGGTGCGGCATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGCCATGGGGTGGTGAACGTCACTGCCTATTACCGCACCTGCCTTTTCCGCCTGTGCCAGAGTGGGGGCAATGAGTCAGAGCTCTGTGACTCTGTGGCCCGGTATGCAAGCGCCTGCAAGAATGCGGACGTGGAGGTGGGGCCCTGGCGGACCTATGACTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
A:
NA
C2:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTTCTCCTACACCCTCC
R:
GCCCCCTGTGCAATTGAAGTA
Band lengths:
344-1637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)