MmuINT0158801 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42372847-42375584:-
Coord C1 exon
chr9:42374992-42375584
Coord A exon
chr9:42373421-42374991
Coord C2 exon
chr9:42372847-42373420
Length
1571 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTGTGCTTTTGATTTTTCAGCTA
3' ss Score
9.61
Exon sequences
Seq C1 exon
TGTCTACCGTGCGGTGCCCAAGCTTCAGCCATTACTCTGTATGTACCAGTAGCTGTCCGGACACCTGCTCGGACCTGACGGCCTCTCAGAACTGTGCCACTCCATGCACGGAAGGTTGCGAGTGCAACGAGGGCTTTGTCCTCAGCACCAGCCAGTGTGTCCCTTTGCACAAGTGCGGCTGTGACTTCGATGGCCACTACTATACCATGGGCGAGTTCTTCTGGGCCACCGCCAATTGTACAGTGCAGTGCTTATGCGAAGAGGGAGGGGATGTCTACTGCTTCAACAAGACCTGCCGGAGTGGGGAGGTGTGTGCTGTGGAGGACGGTTACCAGGGCTGCTTCCCCAAGCGGGAGACGGTGTGCCTGCTCAGCCAGAACCAGGTACTACACACATTTGATGGCGCCGCCTACGCATTCCCATCCGAGTTATCATATACCCTACTCAAGACCTGCCCTGAGCGTCCTGAGTACTTGGAAATTGACATCAACAAGAAGAAGCCTGATGCAGGGCCAGCTTGGCTCCGGGGTGTTCGGATCCTCGTGGCTGACCAAGAGGTCAAGATAGGAGGCGTCGGGGCTTTGGAAGTCAAG
Seq A exon
GTAAGGTTCCTTGCTTCCTTCGATGGAGTGACAGAACATGCTCTTTTCATCTGACTTGACATTCTTCCTCTGGCTGGGAGTTGATTCTTAAAGAGGACATGGATCCCATATGGTGGCATTAAAAAAAAAAAAAGATTGACCCAAAATGAGACTCTAGCAGGTGGACAAATGGAGCCAGGTTTGAATTCTCTGAATTAGATAGCATGAAACTCACTGTCCATAAGAACAAATCATCGCAAAAGGCTATGTGCCAAGCTAAGCCTCTCTCCTGAAGTAAGTTGTAGCATCGCCTCTATCACAGAGCTATCGAAACCAAGGCACAGAAGTGTTAAGAAACTTCCTCTGGGGACACACAGCTTCAAAGTGGGATTTAAATGCGAGTAGGCTGGCGGCTGCCATTTATGTCCTTCATGCTGTACGATTCCTTCTGCTGCCAGAAGGAAGTTCGTTGGCACATTGCAGGGTGCATGCTGTGCTGCCTCCCATCCCTCCGACATGGGCTAATATACCCACAATCAGGTGTCCAGGCTCATTTATTCTGGAAGGAATATTGGGAGTCACCTAGAGCAGTGTTTGACTTCTTAGACAGTGCCAAGGGTCTGGGTGAGCATTCCTCCAAGGGTCTGGATGAGCATCCCTCCAAGGATCTGGATGAGCATCCCTCCAAGGGTCTGGATGAGCATCCCTCCAAGGGTCTGGGTGAGCATCCCTCCAAGGGTCTGGATAAGCATCCCTCCAAGGGTCTGGGTGAGCATTCCTCCAAGGGTCTGGGTGAGCATCCCTCCAAGGGTCTGGATAAGCATCCCTCCAAGGGGCTGGGTGAGCATCCCTCCAAGGGGCTGGGTGAGCATCCCTCCAAGGGGCTGGGTGAGCATCCCTCCAAGGGGCTGGGTGAGCATCTCTCCAAGGGCCTGGGTGAGCATCCATCCCTCGGCTGATTTGGCAGAGGTGAGGTGGTGCCAGGAAAGGACTCTCTTTTCTCTCAGTCGAAGGTGAGTTGAGAGGCATTTGAAAAACAAAAACCATCTCAAGGAGATTACAAGAAACATGTCCACAGAAGGGAAAGGCTGTATTCTCAGCCCCATTAGTAAATTGACAGAGACTAATCTAGTAGAGGAATAGCAGAGATAAAGAGGTAGATAGACATCTAGACATTAGCTCTCCTCTATGCACACCAAAGGTCTGGGGCACAGGAAAATTAAAAATTGATGGCAAAAGAAGGAGCCAGAAAGGTGTGGAGAAAGGGTGCTGTCTGGGAAATGGCTCCTGAAGGGAGATTGGCAGCAGGGGAAATTCTGTCCCTCAGGAGAGGTCACTCAGGGTGTTTGTGTGGAACAAGCTTAAGGTCTGGAATGCACTAAAATAATGAGAAAATCGGAACCTTAAAAGAGAGAAACAAGCTTGTTAATAAACCATTGGTGTTTGTATGCAGTTTACATTTACCATCTGTTACATATACCTGGGTGTTTTCAAGGAGCTGGCCCTGGCACAGAGCTGGTCCTACCCAGCCTTGGAACCACTGGATCCTCTATGGGTCTCTGCCCCTAACAGTTGTGCTTTTGATTTTTCAG
Seq C2 exon
CTAAATGGTCAAGATGTGGAATTACCCTTTTTCCATCCTTCGGGGAGGTTGGAGATTCACAGAAACAAGAACAGCACAACTGTGGAGTCCAAGGGTGTGGTGTCCGTCCAGTACTCCGATGTGGGACTACTGTACATCCGACTGTCCACCATGTACTTCAACTGTACTGGAGGCCTGTGTGGCTTCTTCAATGCCAATGCCAGTGATGAGTTCTGCCTTCCTAATGGCAAATGCACAGACAACCTGGCGGTGTTCTTGGAGAGCTGGACAACATTTGAGGAAATCTGCAATGGCGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCCGAGCTGCTCAAGTTCTACCGGAGCCGCTCCCGGTGTGGTATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGCCATGGGGTGGTTAATGTCACCGCCTACTACCGCACCTGCCTGTTTCGCCTGTGCCAGAGCGGAGGCAATGAGTCAGAGCTGTGTGATTCTGTGGCCCGCTATGCCAGTGCTTGCAAGAATGCAGATGTGGAGGTGGGCCCCTGGAGGACCTATGACTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
A:
NA
C2:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCAAGACCTGCCCTGA
R:
TGGCATTGAAGAAGCCACACA
Band lengths:
350-1921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types