GgaINT0138318 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3574659-3577114:-
Coord C1 exon
chr24:3576541-3577114
Coord A exon
chr24:3575270-3576540
Coord C2 exon
chr24:3574659-3575269
Length
1271 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTGCATTTGGTTGCCCCCAGCCC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGCAGTGGCACGCTATGCCAGTGCCTGCAAGAACGCCGAGGTGGACGTTGGCCAGTGGAGGAGCCACAGCTTTTGCC
Seq A exon
GTGAGTCTACCAAAGCTTTTGAGTATCCGGGGCGGTAAGGAGGAGATGCAGCCCCCTCCGCTTTGGGATGGGTCATTTTCTTGGGAGCTGATGGGTGTTCAGAGGAAGGTCCCCATTTTTTATGGGACCTTGCCCTGCGCCTTGTTACCAGTGCATACCTCGTAGTGGTGTTCCTCTGAGACAACTGGGAAACCATTTAGAAGAGGCACCCCAACCTTACTGGTTGCTGGGAGCAAAACAGCACGGCAGAACATACAGCATTTATAGAAGTCTGAAATCACAGTAGTGGGTGGGCAGACTTGCATAAACTGGGGCTATTTTCTTACTCTCTTGGCTACTACAGACAAAGGTCGGTGTCAGCAAAAGAACAACATCCAACGGAGCCATCCTCCGCAATGGGGGCTGAGGCATACAAAGCACTCTCCTCAGTAGCATACCAAAGGGAAAGAGGCTGCAAGCATCTCTGCTCGCATACCAAAAGTCTCTCAGTTGTTTCACTTGGCAGGCAACATTTGCAAAGCCTGCGCTGTACCATGGTCAGGAGCTCACTCATATCAGGAAGGGCAAGCCAGCTGGTGATCAGTGCATAGTGGGACCACAACGTGACCCAAAGATGAGGACACTGCATCTCACCTATCAATGGCAGTTTCTAAGTGACACCTTTGCCCACAGAGACAGATTTCCCAATTAAGTGGTTTCGTGGTGGTGTTTCAGGAGACACAAGGAGGTTTACAATGCGGTGCAGGAGCATTCCAGGGCTGCAGATGGTGGCTGACAGTACTGTAAGCCATCACCAGGGGATAATTTGAATACAGCATGTTTTTAGCTGTGGCTGTAAACTTGCCGTTGATGGGAAAACATTCATAATTCAGCAGCGAATGCGAAAAATCTCCAGCATGGCTATACATAGTAGGCAGCCCACGTCTCTGCTGTTCAAGTTGTAGAGGCATCCATTTGGGAGTGGGGCATCCATTTGGAAGTGGGGTGTCCATTTGGAAGAGGGAAGCAGGAAGTCCTCTTTGGGTTGGCAGGAGGAAGCGTTATTTGGCATGGGTCTGCGATGTGAGGTGGCAGATGGCAGAGAGGAGTAGGAGTAACCGGGGGAGTGGGAATACCCAGTGGCTGGGAGGCTGCTGAGACTAGTTCTTCATTTATAGCAAGTGGGTCGGTATTCACCTCGTGTCCACCTTCTGTCTGCACCCCACCTTGGTGCTCCTTGCACCACGGCTGCGGGAGATGCTAACTCACACTCTGCATTTGGTTGCCCCCAG
Seq C2 exon
CCCTGGCATGCCCAGAAAACAGCCATTTTGAGGAGTGCATGAGCTGCGTGGAGACCTGTGAGACTCTGGCCACGGGCCCTGTCTGCATGGACACCTGCACAGAGGGCTGCCAGTGTGATGAGGGCTTTGCCCTGCGCGGCTCCCACTGTGTGCCCCGTGGCGAGTGCGGCTGCAACTTTGAGGGCCGCCAGCTGGCCACCAACCAGACCTTCTGGATGGACATCTCCTGCCACTTCCTCTGCTACTGCAATGGCTCAGACAACAGTGTGTACTGCGAGAACGTCTCCTGCAAGGATGATGAGTACTGCCTAGAAGAGAACGGCCTCTACTACTGCCACGTCCGCACTGATGCCTCCTGCATCGTCTCTGGCTACGGGCACTACCTGACATTCGATGGCTTCTCATTCGACTTCCAGAGCAGCTGTGCCCTGGTGCTGTGCACCACCATCTCACGGCCGCGTGCGGAGCGGTCAGACACCTTCCCCACGTTCACTGTCACGGCCAAGAACGAGGATCGTGACACCTCCCTGGCCCTGTGGGTGAAGCAAGTGGAAGTGGAGGTCTTCAACTACAACATTGTTATCCATCGCGCCTACAAATACACTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.0),PF127142=TILa=WD(100=27.9),PF0009420=VWD=PU(51.9=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCCAGTGCCTGCAAGAA
R:
AGGAGACGTTCTCGCAGTACA
Band lengths:
353-1624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]