GgaINT0138318 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3539692-3541817:-
Coord C1 exon
chr24:3541244-3541817
Coord A exon
chr24:3539973-3541243
Coord C2 exon
chr24:3539692-3539972
Length
1271 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTGCATTTGGTTGCCCCCAGCCC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GTGAATGGCTATGATGTGGACCTGCCATATTTCCACCCTTCTGGCCACCTGGAGATCTACCGCACTGACAACGGCACTGTGACGGAGTCAGAGGGACTCCTGAGCATTGGCTACTATGATTCAGGCCTCTTAGAGATCCGCCTCTCCACCGCCTACTTCAACTGCACGGGGGGCCTGTGTGGCTTCTTCAATGGCAATGACAGTGACGAGTTCTGCACGCCCAAGGGCAAGTGCACAGACAACCTGGAGCTCTTCCTGGAGAGCTGGACAACGTTCGATGAGATCTGCAACGGGGAGTGTGGGGACCTCCTCAAGGCATGCAACAATGACTCGGAGCTGCTCAAGACTTACCGGAGCCGCTCCAACTGCGGCATCATCAATGACCCCACCAACAGCTCCTTCCTGGAGTGCCACAACGTGGTCAACGTCTCGGCCTACTACAGAACATGCCTCTTCCGCCTGTGCCAGAGTGGAGGCAACCAGTCAGAGCTGTGCGATGCAGTGGCACGCTATGCCAGTGCCTGCAAGAACGCCGAGGTGGACGTTGGCCAGTGGAGGAGCCACAGCTTTTGCC
Seq A exon
GTGAGTCTACCAAAGCTTTTGAGTATCCGGGGCGGTAAGGAGGAGATGCAGCCCCCTCCGCTTTGGGATGGGTCATTTTCTTGGGAGCTGATGGGTGTTCAGAGGAAGGTCCCCATTTTTTATGGGACCTTGCCCTGCGCCTTGTTACCAGTGCATACCTCGTAGTGGTGTTCCTCTGAGACAACTGGGAAACCATTTAGAAGAGGCACCCCAACCTTACTGGTTGCTGGGAGCAAAACAGCACGGCAGAACATACAGCATTTATAGAAGTCTGAAATCACAGTAGTGGGTGGGCAGACTTGCATAAACTGGGGCTATTTTCTTACTCTCTTGGCTACTACAGACAAAGGTCGGTGTCAGCAAAAGAACAACATCCAACGGAGCCATCCTCCGCAATGGGGGCTGAGGCATACAAAGCACTCTCCTCAGTAGCATACCAAAGGGAAAGAGGCTGCAAGCATCTCTGCTCGCATACCAAAAGTCTCTCAGTTGTTTCACTTGGCAGGCAACATTTGCAAAGCCTGCGCTGTACCATGGTCAGGAGCTCACTCATATCAGGAAGGGCAAGCCAGCTGGTGATCAGTGCATAGTGGGACCACAACGTGACCCAAAGATGAGGACACTGCATCTCACCTATCAATGGCAGTTTCTAAGTGACACCTTTGCCCACAGAGACAGATTTCCCAATTAAGTGGTTTCGTGGTGGTGTTTCAGGAGACACAAGGAGGTTTACAATGCGGTGCAGGAGCATTCCAGGGCTGCAGATGGTGGCTGACAGTACTGTAAGCCATCACCAGGGGATAATTTGAATACAGCATGTTTTTAGCTGTGGCTGTAAACTTGCCGTTGATGGGAAAACATTCATAATTCAGCAGCGAATGCGAAAAATCTCCAGCATGGCTATACATAGTAGGCAGCCCACGTCTCTGCTGTTCAAGTTGTAGAGGCATCCATTTGGGAGTGGGGCATCCATTTGGAAGTGGGGTGTCCATTTGGAAGAGGGAAGCAGGAAGTCCTCTTTGGGTTGGCAGGAGGAAGCGTTATTTGGCATGGGTCTGCGATGTGAGGTGGCAGATGGCAGAGAGGAGTAGGAGTAACCGGGGGAGTGGGAATACCCAGTGGCTGGGAGGCTGCTGAGACTAGTTCTTCATTTATAGCAAGTGGGTCGGTATTCACCTCGTGTCCACCTTCTGTCTGCACCCCACCTTGGTGCTCCTTGCACCACGGCTGCGGGAGATGCTAACTCACACTCTGCATTTGGTTGCCCCCAG
Seq C2 exon
CCCTGGCATGCCCAGAAAACAGCCATTTTGAGGAGTGCATGAGCTGCGTGGAGACCTGTGAGACTCTGGCCACGGGCCCTGTCTGCATGGACACCTGCACAGAGGGCTGCCAGTGTGATGAGGGCTTTGCCCTGCGCGGCTCCCACTGTGTGCCCCGTGGCGAGTGCGGCTGCAACTTTGAGGGCCGCCAGCTGGCCACCAACCAGACCTTCTGGATGGACATCTCCTGCCACTTCCTCTGCTACTGCAATGGCTCAGACAACAGTGTGTACTGCGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=56.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGCTGGACAACGTTC
R:
TGCACTCCTCAAAATGGCTGT
Band lengths:
358-1629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]