HsaINT1043976 @ hg38
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121129638-121138022:+
Coord C1 exon
chr11:121129638-121130211
Coord A exon
chr11:121130212-121137420
Coord C2 exon
chr11:121137421-121138022
Length
7209 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTCTCCTTGACCACCTGCAGCAC
3' ss Score
6.3
Exon sequences
Seq C1 exon
TTGAATGGTCAGGAAGTGGAATTGCCTTTTTTCCATCCTTCGGGGAAGCTGGAAATTTATCGAAACAAAAACAGTACGACAGTGGAGTCCAAGGGCGTGGTGACTGTCCAGTACTCAGACATAGGTCTATTGTACATCCGGCTGTCCACCACATACTTCAATTGCACAGGGGGCTTGTGCGGCTTCTACAATGCCAACGCCAGTGACGAGTTCTGTCTCCCCAACGGCAAGTGCACGGACAACCTGGCAGTGTTCCTGGAAAGCTGGACAACTTTCGAGGAGATCTGCAATGGAGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCGGAGCTGCTCAAGTTTTATCGAAGCCGCTCCAGGTGCGGCATCATCAACGACCCCTCCAACAGCTCCTTCCTGGAGTGCCATGGGGTGGTGAACGTCACTGCCTATTACCGCACCTGCCTTTTCCGCCTGTGCCAGAGTGGGGGCAATGAGTCAGAGCTCTGTGACTCTGTGGCCCGGTATGCAAGCGCCTGCAAGAATGCGGACGTGGAGGTGGGGCCCTGGCGGACCTATGACTTCTGCC
Seq A exon
GTAAGTTGGGGTTGGATTCTGGGAGAGGCTTTCTAGCTGGGAAATAGGTGCCATGCTGGGCCTTACTCAGGACTTCCCTTCCAGGTGGGACTGAGCTCAAGGGTGATGTTAATTACTGTGTATACCTACCCTAGTCTGATGTGTCCTCCCAAAGACTCATCACCCCAAACCGGAGAGCCTCTCATCTTTACTTTTTTTCCTAACTGCACAGTACCTCCTCACTGCAGAACAATTAACCATCCTATTTGCATGTGGTTTTATCTAGCAGAGGGTAGAGGCACCATGTCAAAGGACTAGAAATCTTTGTGATGGCTCTGTAGGTGCCTTCTCCCTTGGCAAAGAAGAGCCCCATTGATTTTGATAGGAAGTGATCGGCCAGGGCACCTTTGGGGCATGGAGATTAGCATGCTCCCCAGGGCAAACCTGACAATGGGTATTAAGAGAGTCCTGTGTTGCTGGCTTTTAATTTTGTCCCGAAAGTATCTGACCCCTCTCAGCAATGCAGTGGCAAGTACTAGTAGTAATTAGAAAACTTTCTGGGAAGACCTGATACGTAACACCCTTGATTATCAGGGAAGCCACAGGGAGAAGTAACATGGCAGAAAGCAGGACTCACTCGTGGAGCAAGAACTGCCTCATCTGGCCTTCAGCACACAACCCTCTCCCACCACAAAGGTGGGCCCCACACCAAAGCCAAGGCCACCATTAAGATTCCATCCCCGGCCGGGCATGGTGGCTCACGCCTGGAATCCCAGCACTTTGGGAGGCAAAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGGGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGGGCCTGTGGTCCCAACTATTTGGAAGGCTGAGGCAGGAGAATCGCTTGTACCTGGGCTGCGGAGCTTGCAGTGAGCCCAGATCACGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAGGATTCATCCCTGACGGCTATTTATCTGTCCTCCGTTTTTAATTGGCAAAAGTATTTTTTAATTTGAAATAATTTTAGACTTACAGAAAAGTTGCAGGAATAAGACAGTCTACCATTCTCTCAGATTCCCGAATCGTTAACATTGTAACACATTTTCTTTCTAATTTTGTCTCTGAAAATATACTCACTCTTTTTCTAAACCACTTGAGAGTAAGTTGCTGTCATTATGCCTGTTTGTACCTAAATATTTCAGTGTGTTTCCTAAGAATAAGCACATTTATATGACCATAACATAATCATTAAAATCAGGATATTGCCATTGATACAATACTATTATGTAATCTGAAGACCATGTTCATATTTTGTTAGTGGTTCCAATAATGTCTTTTACAGCCAAAACAAAAAACAAACCCTGGAATCCAATCCAGGATCACATGTTGCATCTTATTATGATGTCTCTGTAGACGCCTTTAATCTGGAGTAGGTCCTCAGTCTTTGACTTTCATTGTCTTAGCGTTCTTGAAGAGTACAGGCCAGTTATTTTGCAGACTGTTTCTCAGTTTGAGTTGGCTTATATTTCTTCCTGGTTCCATTGAAATTATGCATTTTTGGCAGGAATACCACAAAAGCAATGATGCGTCTTCTCAATGTGTCATATCTGGAGGCCTCTGATGTTGGTTTGTCCCGTTACACTGAGCATGATAGATTCGATCGCTTGCTTAAGGTAGTGTCTGTCAGATTTCTCCATTGAAAGTTACTGTTTTTTAATCATATAATTAATACATATTTTTCAGGGAAATACTTTAAATTTAGGTAGCTATTCTATTCCTTGAACTTGCATACACTAGATTTAGTATCCAGTGATGATTTTTGTCTGAATCATTTATTACTGTTTGTGAAATGGCAATTTTTTTCTAATTCAATGGCTCCTGCATTCATTAGTTGGCATTCTACTGTAAAGAGATGTCCTTTTCACCCATTTGTTTCTTTTTATTTGTTTAGATGACTCATGGATTCCTACTTAACCGATTGTATCTGTTATCATAATTTGTTTTATGCTCAAATTGTTCCATATACGGCCAGTGGGAGTCCCCTCCAGCAATGGTTTCTGTTGACATTTGCTTCATCATTCGTTGCTTTCCACGAGGCACGATGTACTCCGGGCTCATCTTGTACTTTCTCTGCTCTAGCCTTGGATTAGCCATTTCTCCAAGGATCTCTGGTTCCTTCGAGTGGAGCGTAGTGTTGAGGAGATAGGATCTGGGTGTCAGGTGTGCCCGTTCTTCCTAGAGTGTCATTGATTCTAGCATTCCTTAGTGGAGAGAGTGAGGAAGTGCATGTATGTGCCTATACACACCCTCCATACACATTTTTATGTAGCTAGGTGTGTTACTCTCTCTTTTTATCTGTTTCTGTCTCTATCTCACCATGAGTTCATACTGAACCTACAGTTTCAGTCCAATACCGCAGAGTTTTCTAGTTTTCCTTTTTTAATTTTTTTTGAGATGGAGTCTCACTCTCTCACCCAGGCTGGAGTGCAGTGGCATGACCTCAGCTCACTGCAACCTCTGCCCCCACCAGGTTCAAGCAATTCTTCTACCTCAGCCTCCCGAGTAACTGAGATTACAGGTGCCTGCCACTGCACCTGGCTAATTTTTTTTGTGTGTGTGTGTTTTTAGTAGAGACGGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTCGTGATCCACCCACCTTGGTGTCCTAAGGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAGTTTTCCATTTTTTAGTTTCTTTTATCTGAGAGTGAGAAACCTGGCCCATTGTATTTCCTCCTGTTTGCTTATTTTCTTAGCTTCTTATTTTGAAATAATTTCAAAACTACATAAGAGAACACCTGTAAACTCATTGCCCAGATTAACCTATTAATAACATTTGTTCATTTGTTTTATCATTCCCTCCCTTTCCCTGTCTCTTCCTTCCTCCCTCCCTGCCCTTCATGTGAGAGTGAGTTGCAGACTTCATGCCTCATTACCCGTAAAACTTCAGTATGTATTTCCTTAGAGTAGGGGCATTTATATACATAACCACAGTACAGTTTTCAACCTTAGGAAATTTAACATTGATATAGTAATTTAACATCCATATTCCAATTTTGTCAGTTGACTGAGCAATGTTCTTTACGGTTCTTTTGGGGTGCCAGGATGGGGAACTCAGTACAGACCTAATTTAGAATCACACGTTGCATTTCATTGTCGTGTCTCTTTAGTCTCCTTTAATCTGGAACAATGACTTAGTTTTCTTTGTCTTTTCTGATATGGGCATTTTTGAAGAACACAGCCTCCCTGCCTTTTGAAACAGAATGATCCTCCATAAACAGAATGACCCTCCATTGGGGTTGATGTTCCATCCTGAGGATCTTCAGCTGTGCATCTCCACTCAGCCTCCCGGGCAGGTGCCATGTGGTTTTTCTCATGGAATCACAGCACACACGGAAGCACGATCTTGTCCAGCCTCCCCTCATTGGTGATGTGCATGTTGATTCCCTGGTCAAGGTGTTAGCAAATGTCTCTGCTGCAGAGTCACTGTGAGCTTTCCCTTGCAACTAATAAGCAACCCATGGGGAAATACTTTAAGAGTGTGCAAATATCCTGTCTGTCAGTCTATCTGTCTGTCTATCGGTCATCTTATCAATCTGGACATGGATGCCTGTTTTTTCCAGTGGTCTATATTTCATCTATATTTCATCTTCCATGTATTAATTATTTTTGGTGTTAAAATTGCTCTGGATTGGCCTGTAGGATCTCCTTCAAGCTGGCTCCTGTGTCCCTTCAGCATGCCTCTGTCATTTTTTTTGAGCACTTTCTTCCTTTTGGCATAACAGGGTGCTTCGCGCTCATCTTTTAATCTTCCCTGCCCCATGCTGGAATCAGCTTGACTCCAAGAAGCCCTGGTGAGTGGGGAATGTTATTAGAAACCAAGATGTAAGGGAGGTGTCCCTGTTGCTGTTGGGGCATCTTTGCTTTGCCTCTAGGTCCTTTCAACAGACGGAGCTGAAAACCAACACCACACACACACACACACACACACGCACACACTTCTTTTTAACTCTATGATTCCTGACCTTGGGAAATCCAAGGAGCATGTGGAGAGCTTAGTGGTTGTCATCTCAGAAGGGCAGTTGTGTCCCTGGTGAGCCCCCGGGGAGGGACTAATAGCAGATGCTGGGACTCCAGAGCTACCTACAGCAGGAGAGCCTCCACGGCTTCTGTCGGCCACCACATCCGGTGGGACCTTATCATACTTTCCCAAAGTCTTTTTTTTTTTCATCCACCTCCCTATATCCTCTTTTGTCCTATCTCCAGCTTATCCAACACGATCTCTGTTTCTGCTCCCACATTGAGCCTCCCAGTTGTATTTCATTCATGCTACAGGATTGCCGAGTCTCCCCTATACCAAATCTGTTCTGTTGCCAGGCCATTTCAGTGCCGTCCTTTTAGACTGCTAACTCCTACCTGGCAGGGGATGTTTGAGTTATTTTTGTGCTGCATGGAGCACAGTTTGGTAGCGTCGTGTGTGCCAAGTTAGCAGGGCGTGATGGTGATATTCCCTGTTTCCCTGCATGTGACAGCTACTGAGAAAAGCTTCTCACTATCCCTCATCTGGGCCAGCAGACCTGGAGGAAGCTCTTATCAGTGTCTTTTTTAGGGAAGATGTGGGCAGAAGCAGTCACATGGAACATGGCTTTCTTGGGCTGAGGGCCAGGGCTCCTACTTGAGATGTCCCCCAGGATGTCTTATCTAGATCTTGTGCACATGGTTCTGGCGAGTAGCACTGGATAGCACGCACTTGATTCGTCAGGCCGCCGAGCACTAAGGGATTAATCTGGTCGGAGTCTTGCATGGTGGGGATCAAACTGGATGACAGCTGTGAATCAGGAACACAATCTTCTTTGAACCTAGAGAGACAACTGCTGCCTCTGTGTTCAGATATTTTTAACTGGCCCTCCTGTTGGCAGAGCCAGGCTGCCCAATTAAATAATTTCACACAGGCATTCCGGGGCCTAGGGGAAGTTCTATTACTCCACGTCTGTGTGTTCCAGACTTTCAGACAAATTCAGACAACACAATAAGTCATAAAGTGAGAGCCATTTAAATAAGTCATGTTATTTGCTATCACCATAAATCTGCAGTCAGTGTTAGAACATTCATAATTTAAAGACAAATGTGAAAATCCCTCTACACAGACATATATAATCAGTGCTGAACTAGCCTTCAACTCCAAAGCCGTGTGGTATTGTAGTCAATGGGAGTGGAGATAGTCCTTTAGCGCAGAGGAAAAAATGATTGGCTTTCAGTCCACAGTGCAGAACTGTTGTATCGGTACTTGTGGGCAGAACTATTATTGCCATGCAATTTATTTCTCTGTAATGTCCTCCGTGTCCTTGGATTGTAAAACAGTATTAAGGAGTGATGGTATGTATACGAGCCAAAGAAAGTTTTAAAGGCGAGATCTTATTTTCCCAGAAGATGGTGGGGACTTCGCTGATCTTTAGATCGCACAGACTTGTAGGAGGCTTCTTCTGTGCTCCTGAGTTCTGTCCCTGCCTCTGGCAAATTGTGACCCATTAAAGTAATAGTGAGAAATAGGAAGTATGCCTACCACTACATGGTGAGTATCCCGTGGTATTATCATTTTATGTGCTTTTTTTTTTTCTCCAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCGCAATCTCTGCTCACTGCAACTGCCACCTCCCAGGTTCGAGCGATTCTAGAGCCTCAGCCTCCCGAGTAGCTTAGATTACAGGTGTGTACCACCACGCCTGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTTACAAGTGTGTGCTGTGCTTTTTGACCAAGAGTCTTGATCTTTCAAGGAAGGCTTCTGGGAAGATGGGCAATTTGAAGTGAGACTTGAAGGATGGGTGGGACTTGGCTTTGTGGGTGGGGGGCTGTCCAGGAAGGGGAAAGCGCATGAGCAAAGGGGCTGCGGGGTGATGACCTCCTTTGCAGAGAATGATGAGGAGGTGGACGAGGCCAGAGGGCACCAGGAACAGAGAAATGAAAGACAAAGGGAGAGTCTACAAGCCAATTTGCAGAGTAAAAATACCTACATATAGCCTGTCTGTGTAATAGAAGGAGGTACAAAGAGGAGCAAGGCATACCATTGATGGAGACCCTCTTGATAGATTAGATTATTAACCCTCAAAACAACCGTGCTAGCTAAATGTGGTTCATACTTAATGAAAGAGGAAACAGAAGCTCTGAAGACATGAAATAACATCCCAAAGTTAAGTTAGCAGCATCCACAGGTCTCTGTGGTCCCAAAACATACAATGCTCCCTCTCCAGAGTCTTTGAGTCAGTGGACCCAGATTAAATCTCACTCTGGCACTTACTAGTTAGATTTATTTAAATCATTGAACTTCAGTTTCCTCACCTGTAAGATAAGAATGATAAGATTTACCTTACTTTCCAGGTTGTTGAGATAAGGTACACAAAAGTGCCTAGGACAGTGCCTGGCATGTCGCAGGTGCTCAATTCTGGGTCTTAGACTCAAAACCTTCTATGTGGAAAGCTAGGTGCCCTAGCAGAGTGTGTGAATGAAGGGGTGCCACTGGGACTTGGATCTCCCAAATGAGGATGACTACAGCTCACTGTACTGTGCAAATAAGACCACACACATATACAGAGGCACACACATGCAATCACACACATGGATACTCACATGCACACACACGTGCACATGCACACTCGCATGCACAGATGTGTGCACACACAGGCACTCATACGTACACACACGCACTCGCACACATGCATGCACACACATGCACTCGCACACACGCACGTGCACACACACATGCATGCACAAATGCATGCATACACAAATGCATGCATGCACACACGCACATGCACTCACAAACACACATGCACTCATACACACATGCATGCACGCACACTTCTGTCTCTGACTTTTGTCCTTTTCTCAAACCCGTCTTCTCCTTGACCACCTGCAG
Seq C2 exon
CACTGGAGTGCCCAGAGAACAGCCACTTTGAGGAGTGCATCACATGTACAGAGACCTGTGAGACCCTTACCCTGGGCCCCATCTGCGTGGATAGCTGCTCTGAGGGATGTCAGTGTGATGAGGGCTATGCTCTACTGGGCAGCCAGTGTGTCACGCGGAGTGAGTGTGGCTGCAACTTTGAGGGGCACCAACTTGCCACCAATGAGACCTTCTGGGTGGACCTGGACTGCCAGATCTTCTGCTATTGCAGTGGCACAGACAACAGGGTCCACTGCGAGACCATTCCCTGCAAGGATGATGAGTACTGCATGGAGGAAGGTGGCCTGTACTACTGCCAAGCCCGCACCGACGCCTCCTGCATCGTCTCAGGCTACGGCCACTACCTCACCTTTGATGGCTTCCCCTTTGACTTCCAGACCAGCTGCCCACTCATCCTGTGCACCACAGGAAGCAGGCCAAGCTCAGACTCTTTCCCCAAGTTTGTTGTCACAGCCAAGAATGAGGACCGGGACCCGTCACTGGCCTTGTGGGTTAAGCAGGTGGACGTGACCGTGTTTGGCTACAGCATCGTGATCCACCGAGCTTACAAGCACACTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927:ENST00000392793:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains