RnoINT0149331 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46643404-46649696:-
Coord C1 exon
chr8:46649123-46649696
Coord A exon
chr8:46644006-46649122
Coord C2 exon
chr8:46643404-46644005
Length
5117 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTCTCTTTGACCACCCTCAGCTC
3' ss Score
5.53
Exon sequences
Seq C1 exon
TTAAATGGTCAAGATGTGGAACTACCCTTTTTCCATCCTTCGGGGAGGCTGGAGATTCATCGAAACAAAAACAGCACAACTGTGGAGTCCAAGGGTGTGGTGTCTGTCCAGTACTCTGATGTGGGACTACTCTATATCCGGCTCTCCACCATGTACTTCAACTGTACTGGGGGCCTGTGTGGCTTCTTCAACGCCAATGCCAGCGATGAGTTCTGCCTTCCTAATGGCAAGTGCACAGACAACCTGGCGGTGTTCTTGGAGAGTTGGACCACGTTCGAGGAAATCTGCAACGGCGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCCGAGCTGCTCAAGTTCTATCGGAGCCGCTCCCGGTGCGGTATCATCAATGACCCCTCTAATAGCTCCTTCCTGGAGTGTCATGGGGTGGTCAACGTCACTGCCTACTACCGCACCTGCCTTTTCCGCCTATGCCAGAGCGGAGGCAACGAGTCAGAGCTGTGCGATTCTGTGGCCCGCTATGCCAGTGCTTGCAAGAACGCAGATGTGGAGGTGGGCCCCTGGAGGACCTATGACTTCTGCC
Seq A exon
GTAAGTTAGGGCTGCAACCTGGGGCGGCTATGGCTGGGGAAGCATTTTCCTTGATTTTCTAGTCAGGACTTCTCTTCTTAGTGGGACTGAGCTCAAAGGGGAGTCTGATGGCTTGACTTTGGTCTTATTACCCCAAAACTAGGCTGTCTCTCAACTTAATTTTCATTTCAGTGTGTGTGGGGGAGGGTGGAGAAGGAGAGGGAGGGAGGGAGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAACACAGAGAATATCCGATGCCTTGTGCAAGTGTGAACTTCCCGATATGAGTATTTGTAACCAATCTTCTGCAAGAGCAGTGCATGCTCTTAATTGGTGAGCCATCTATCCATCTCCTCCAACCTTATCTTTTGAGACGGTGTCTCTTACTTAATCTAATGCTCACTGACTGCCAGACTCACTGGTCAGAGAACTCTAGACCTACCTGTCTCTCAGTACTGGAGTCATAGTTACTCGGGCTTTTTTACATGGATTCTGGGGATCTGAACTGACCCTTAAAGTTTGTGTGGTGGGTACCTCATCAACTGAACCGCTGCCCAAGTCCCTTCTTTTCACTACTAAACACACAGTATCTTTTCATTGTAGAGCAGTTAGCTATCCAGTTGACTGGTGGTTTTATCTACAGAAAGCACAACCACCAGGTTAAAGGATCAGAAACCTTTGTGATGGCTTCATGGGTACCTTCCCCTGGGGCGAAGAAGAACCCCATTCATTATTGTAGGGCACAATCAGCTAGGGAGCTTTGCAGGGTGTTGGAGATTAGCATTTCTCCCTGGGGCAACCCTGACAATTGGCTTTAAGACAGTTCCTTGTACTTGGCTCTTCATTTTGTCCCCAGAGTATGTGACCCCTCACAGCAGGGTGGCGGTGAAACCAGTAGTCATTAGATAACTCCCAAGCAGACAAGATACCCAACACCCGGCTTATCAGAAGCAGCAGAAGGGGAAAGGAGAGGCTGAGAGTGTGGAACTGTGTAGCAGACTAAGAATGGCTCAACTACCTCACTTTATCTCACTAAAAACTTTGCCCTAAACCATGAAGACACCAAGTTCTGAGTCTGTGTATCTCTCTGCCATAGTCCACCCTAAGTTTTATCCTTAAAAAAATTTTTTTAAATAGTTCCAAAGTTACATAAAAGTTCTGAGCACCCCTATGCAGTCATTACCCAGGTTTAAATCTGTTGTATACAGTCAGTTCCTTTTGTTTCCTCTCCACACATCTACCAACCAGCCCCCAAACAAAAATTTAACAGTAATTTGCAAATAGCATGAAAATCAACCTCTGATACTGTGACCAGGTAACCACTTGCAAAGAGAGAAGCATTATTTTTGGGGCAGGGTTTCAGCTCTAGGGTTGGTTAGCCCTATTGCTTCTGGGCCTGTGGTGAACGTACAGTGTGGTGAGGTTCATGTGAGCAAGCCAAGCTGTTCATTGCAAGAATAAGGGGGAGGAAGGACTAGGTTCCCGCTCATTTCAAGGAGCATCCCTAATTTCCTAGAGACTTGTGCTGGAAACCAAACCTTGACATTTGGGGGACATTTGAGATCCCAATCAATCATTTCTCCTCACTAGTTCTTCAGTAGACAATCCCTGAGACGCAGGACATTTGCCGTACACTGTAGTGCAGTTATGTGCTTTAGGACATTTTATTTAGACTTAGTGTCACTCATGCCGTACCTCAGCTGTGCACCCTATTCAGCGTCCTGGACAGGCTCCACGTGCAGAGTAAGGCTATATCCAGCCTGCCCCCTTGTGGGTGAGGTGCGTGCTTAAGTTTAGGCCAAGGCATGGATGGAATGTCTTGCCTGTAAATTTCCTGCGTGTTTTCCTCTCACGACTGAAAAGCAAAGGGTGGGAGGTTTTTGGCATGTACCTCTGCTTCTGTCTGTCAAAGTCTCTGTCCTGGCTCAGCACTTACTGTCAATCTTGGTTTGTGTTAAATCCTATGCACTGTGGTTACCGACTCACAAGTTTCAGGCCCAGTGCTGTCTTGTCTGCTCTACCAGTCAGGGATCGCCATCCCACCGTAGGCAAAGCCCCTCCCCCAATCTCTTCCACCTGTCTCTCAGTTGATCCACTCATCTGTTCACACCTCTTGTCTCTCTGCACCACATCAATATGTGGATTCTAATCTTTTAAATTCCCATATTTCATATGTCATCTAAAAAGTATGTAAGTATGTTTGGTGTTAAACTTGTTCCTGTGTTTGGCCCATGGGAACCTTCAAACTGACCCCTGTCCTAGGCCGTTCCTCTGTTTTGCTTTTCAGCACTTTCTAACTTTCTGATCAGGCAAGAGGGTCACATTTATCTCTGACTTCTCTCCTCCCTGGGCAGTGTTCAGCCTCCATATTAAGGCTTCCTACTTCCTTTTAGTGAAGGTTTTGTGGAGGTCAACATCTAGGTACCAGTTACCCAGTGCTCTTGGGAGTATCATTGCTTTGCTATAGGCTCTTTCAACAGAATTAAATGCACACACACACACACACACACACACACACACGCACACGCACACACACACAAACTCACACACACATACACACACAAACACACATATTTACACACTCACATGCACACACACATGCATACACATACTCACACATATGCACACACACATGCACACACACAAACACATACATATATAAACTCACACACACATACACTTGCAAACACACATACGCATATTTACACACTCATGTGCACACACATACACACATGCATACACATACTCACACATATGCGCACACACACACATACACACACACACACATACACACACACACACACACACCTGTTAACTCCTGATTTATGAACTTCAGAAATCTGGTGAGTATGTGGCAGGCCTGGTGGCTGTCAACTTGGCAGAGGGTAGTTATGTCCCAGATGAACCTTTGCTTCCTTCAGAAAGGACTGGAGCAGAGGCCATGAGTCCTGAGACTGAACTCTTTACAAAGTCACCTTCAGCAGGAGAGCTACTGTTCCTATCGACTGCCCTACTAGTGGGGACCTTGAAAGACTCCCCCAAATTCTCCTCTATGCTCTGCTCTCCCACACTGCCTTTCCCCAGCTTCACTGTGGCTTCTGACCCTGCTCTCACGCCCAGCTTTCTGGCTGGACTTCACACATGGCATGGGATTGCCAAATTCCCTGTCCCAGATCTATGCTACTGCCGGGTCATCCTTGCCTGGCAGGGAGTGCTCACGGGTTGTTTAGCACTGTGTAGAGCGCATATTGATCGCACTCAGTTAGCCTGGCCCAGCACTGTGGAAATGGTTCCTCCTCTTCCTGAGAAAAACAGGTCACCAAGCCCCATTCAGGCCAGCAGAGTCAAAGCAGCTCTTGCAAGTGTGGTTTCAAGGAGGGTTTTGGCATAGGTGACCACATGGAGCCCGGTTTCATTTGGAAGAGGACGGGCTTACCCCTGGCCTACCTGCTACGTTGTTTCTTTTAACTCCGATGAGGATGACCAAGTGTGCACATTAATCAGTCAGCTGCCTGAGTATCAAGGGCATATTATGTCCTAACAAACGGATTAAGTTACAGCTACAAACAAGGAAAAGCATCTTCTTTGAACTTGGAAACAGACAACCATGCTCTCTGTGTTTGGACATTTTTAGCCAACCTTCTCGTTGGCAGAGCCAGCTCCCCAATTAAGTAATTTCTCAGAGTGATTTCGGGGGCAGGGGAAAGTTTTATGACTCCACGTCTCTATGTTCCAGACTCTCAGACAAATCCAGACAATGCAGTAAGTCATAAGCCACAGCCATTTAAATAAGTCATGTTATTTGCTCTCCCCATAAACCTGCAGTCGGTGCTGTGGCATTCATAATTTAGAGACAAGTGTGAAAATCCCTCTATCCAGACATATATAATCAGTGTTGAACTAGCCTTCAACTCCAAAGCCGTATGGTATTGTAGTCAACGGAAATGGAGAGAGTTCTTTAGCCTAGAGGAAAAAAAAATAAACCATTGGCGTTCAGTCCTCAGCGCAGAACGATTGAGTTGGTCCTCCTGGGTAGAGCTATTATATCCATGCAACTTATTTCTCTGTAGTGTCCTTCACGTCCTTGGATTGTAAGACACTGCAAAGGAAGGATGGTATGTCTGAGAGCCAAAGAAAGTTCTGTGAGCAAGCCCTTGTTTTCCTAGAGGAATGGGGACCTTTGCAGATCGTTAGAACCCACAGGCTTGTAGGCAGACTTCTTTGCTCCTGGGTTCGGTCCCTGCTCCTGTCAAATTGTCACCAGCCAAGGCATGGGGTGAAGTGGGTTGCTTACCCAGAACCTCACAGAGAGTGAGCCGCTCATGGTCTTCTACGGCAGAGACTTGATCCAACCAGGAAGGCTTCTGGGACAAAGTGTGACTTTGAAAAGGAATGTGAAAGAGTCACAAGACTTGGCTGTGAAGGGCACTATGCACGTGAGGAAAGTATGAGCAGAGGCAGGGGGATCACTACATCCAGAGCGTGATGATGAGATAAAGGAGACCTCAGGGTGCCTGATGCAGAGAAAGACAAGACCAAGAGAAGTATATTGGACCAATGCAATCTTCTTAAGAGAAAGATGTGAAACCAGAGCTCAGAGATATTCACAAGCCAGAACTGAAAGAGTAGCATTCTCAGGCTTCTATGACCACAAAGCAAGTATTTTTGTAGCACATCACACATGGTCTCCAGAATCTAAGCCAAGACACCCGTTTCAACCCCTGCCTGGTTATAGGTAGATATGTTTTACCACTGATCTCCCAATAGAATAATGATTTAAAAAAAAGACTTATCTAAATCCAAATGGCTGAGATGAGGCACTCAAAAAGGCCTAGGAGGGGGTCCACATTTAGCATGTGATCAGTATGGGTCATAGACAAAGAATCTTCTGCATAGACGATCAAGTACACAAACAGAGCCTTGGAGTGTCCTCTGACCCTCGGTCATGCCAGTGAGGCATTCAATTCCATGGCTTCATTAAGCTCCTTGTCATGATTGCACACACATACACAGTCACACAGATATGCACATACACATATACTTCTGTCTCTGCCCTCTGTTCATTTTTCAAACTTGTCTTCTCTTTGACCACCCTCAG
Seq C2 exon
CTCTCGAATGCCCGGAGAACAGCCATTTCGAGGAATGTATGACATGTACAGAGACCTGTGAGACCTTGGCCTTGGGCCCCATCTGTGTGGATAGCTGCTCTGAGGGATGCCAGTGTGATGAAGGTTATGCACTGCAGGGCAGCCAGTGTGTAACTCGGAGCGAGTGCGGCTGCAACTTTGAGGGGCATCAACTTGCCACCAATGAGACCTTCTGGGTAGACCAGGACTGCCAGATCTTCTGCTACTGCAATGGCACAGACAACAGTGTCCACTGTGAGACCATTCCCTGCAGGGACGATGATTACTGTATGGAAGAGAGTGGCTTATACTACTGCCAGCCCCGTACTGATGCTTCCTGTATCGTCTCCGGCTATGGCCACTACCTCACTTTTGATGGCTACCCTTTTGACTTCCAGACCAGTTGCCCTCTCATTCTCTGCACCACAGGAAGCAGATCAATCTCAGACTCTTTCCCAAAGTTCATTGTCACAGCCAAGAATGAGGACCGGGACCCATCTCTAGCCTTGTGGGTGAAGCAGGTGGATGTGACCGTGTTTGGCTACAGCATTGTGATCCACCGGGCTTACAAGCACACTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.4),PF127142=TILa=WD(100=28.4),PF0009420=VWD=PU(50.9=40.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]