GgaINT0138328 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3567137-3567691:-
Coord C1 exon
chr24:3567443-3567691
Coord A exon
chr24:3567174-3567442
Coord C2 exon
chr24:3567137-3567173
Length
269 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AGCTTTTGTCCTGCTCACAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
TGTGATCAACCTGACAGTGCCAACGCAGGAAGGGAGCTTCACGACCAAGATGGCCCTATACAAGAACTCCTCCTACAAGCACCCGTACCGGCAGGGGGAGGTGGTGCTGACCACACGGGATGTGCTCTATGTGGGGGTCTTTGTGGTGGGGGCTGACTCCAACCACCTGATCCTGATGCTGAACAAGTGCTATGCAACGCCCTCGCGGGACAGCAATGACAAACTACGCTACTTCATCATTGAGGGAGG
Seq A exon
GTGAGTGACTGCAGGCGCCTTGGTTTGGTCATCTGTGGGAAGCATAGCTCCACAGGACCTACCACGAAGACACCTAGGTCTATCCTAGCCAAAACTGGCATGCGTCACAGGGGTGCAGAAACATGGGTCTCATATAGGTACAGTGGCATCAAAGAGAATAGCTGAAGGATTTGGTCGAGGGGGTCTCATGGGGACAGAGGCAAGCAGTGCTGCTTGAGGAAGGATCCTAGTCACAGAATCACCACGGCCAGCTTTTGTCCTGCTCACAG
Seq C2 exon
GTGTCAAAACTTGAAGGACAACACCATTGGCATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(34.9=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCAACCTGACAGTGCCA
R:
TCTATGCCAATGGTGTTGTCCT
Band lengths:
284-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]