BtaINT0146755 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32335799-32340992:+
Coord C1 exon
chr15:32335799-32336047
Coord A exon
chr15:32336048-32340829
Coord C2 exon
chr15:32340830-32340992
Length
4782 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
3' ss Seq
GTCCCTTTCTTTCTGAACAGGTG
3' ss Score
12.3
Exon sequences
Seq C1 exon
TGTCATTAACCTGACGGTTCCAACTCAAGAAGGCAGCTTCACCACCAAGATGGCACTCTACAAAAACGCCTCCTACAAACATCCTTACCGCCAGGGTGAAGTTGTACTGACAACTCGAGATGTGCTGTACGTTGGGGTCTTTGTGGTTGGAGCTGACTCCACACATCTCATTCTGACATTGAACAAATGTTACGCCACCCCATCCCGTGACAGCAACGACAAGCTCCGATACTTCATCATTGAAGGAGG
Seq A exon
GTGGGTAGCCTCTTGAAGGATGGTCTCAGAGCCTTTAGTGTTAGATCTGTCTACATCTTTTCTAGGGAAGAGAAAGGTAACTAACATTTGCTGACTACCTACAGGACCAGCATTTTGCACCCAAGAACTATCTAATCCTTATAACTACATATGAAGTAAATGTGATAAGCTCCTTTTTATAGACGAGAAGGCTCAGGCTTAGTGAGAACAAGCAATTCTTGAAGTCACACACAATTTAGTGGTAGATCACCAGTTTTCTGTGGCATTAACTATAAAATGCTCTATTCTCAATGTGATCAAACAGGGCATTCTGTCCTACCTACTTTGAATTTCAGTCTGAGTTGAATGTGGATTATCTACAAATGAAAGGAGGTAATGAGAATTACTAAAGTTGGTGAATAATGGATCTATCAAAATTTAAAAGGAATTGGAATAATAGCCTGTAGGTGAGTTTTTCTACTCACCAATATGTGCCCAGCACCTATTATATTTCCTGAAAAATAGTGGTTATGCAACAAAATTATTGAATGAAGGAATAGGTGAATGAAAAAGAAGAAAAGACTATGAACCAATCAACAATCATGATAATTATCTTTATTTTTTAAAAACACTTAGTGGTTTTGTCAAGCAACAATAATTTCTTAACAGGTTTATTGCATACATAATTTATGTGCAATAAAATGCATTTGCTCTAAGTGTAAAATTCAACAATTCTTGGTAAATTTACAGAGAAGTGCAACCATCATCATAATCTAATTTTGGAACATTTCCATCACCCCAGTACATGAATTCTTAAAAGCAGATGATTGTATTTATCAAAATTCTTTCTTTTATAAGTGGTAGAGACCATTTCAAACAAGTTTATGCAAAAACAAAGTACTTAATGTTTACAAAACCAAATCACATAAGTAGATGTGGCTTTGGGAATAATTGGGTTCACGGGGCCAGTTGCTGTCAACACTCCCTCCCTCCCTCTGTCCTTTGTCTCTCTGTTTCTCTCATTGTCTCTGTCTTCTCATTGTCCTCATTAGACACCAGCATTTTTTCAGCATTGTAACCCCCAGGAATGAGCATTCCTTCTAATCCCAATTCAGGGAATTGGGAAGGAGTATGATAAGCTTTTCTTGGATGGATTCCCTCTCCTTTGTTTGGAGAAGATGCAACATTAAAGTGCCTGGTGTTGGAGAGGACAGTTTTTTTGACCCTGTTAGGGTTCCTGGCTGGGTCTAAAAATTATTTGGACAAAGATTAACAGGAGAAAAGCATACACATTTATTTAATATAAATTTTACATGACACGGGAGTCTTCATAAGGAAATGGAGACTCTAAGAAATCGTTCAAACTGAGTATCGTTTTCCCCATTTGACAAAGAGTGAACAGTTGTGGAAATGATAGGTCCATCATGTGTGGTCACTATAGTGAACTGAGGGAAATCTTAGCCAGACTCTTCAGACTCTTCTCAGCGCCCCCTTGACTTTGGAGATAAGAATGCGCCTTTCCTCTGGTATACCTCCCACAGGAGAGTTTTATGGCCTCTTTCAGGGGAGAAGAGTGACCTTCCTGATTCTGTCATTTTTCTCAAACTCCTTCAGTTGAAAATATTCAAGATGCCAGATTTGGGAATAGTGTTTCTTGAACCCTATCTCAGGCCTGAGTCAGCACCCTGGGGTGCTATGGATAGGGTATAATTAGCCTTCAAGTTGGGGAGGGAAGGAATAGTTCCCCCAAAGAAGACTATGCTTCTAGGCAGACAAACAATCAACATCCACTATTTTGCAGATGAACAGGCTCAGAGCCTGAATACAGCTCACCCGAGGCTACCTAACCAGCAAGGGGCAGAGGAAGAAATCTTTCAGGTACCAAAGTACATCAACTCCCTACCTGGCCAGGTGTGGCTTATGGCCTGGGTTGCTGAGGTGTCGAATGGGATTTTCAACAAAGGCCTCATGAAGGCACTATCTTTCTGGGTTGATTTTTAGCCTCCCTGGAGGCAGAGGGAAGGGCTTGAGGATTACATGGTATCTTGCAGATCCAGATGTCAGGCTAATGTAACAGGTCTCTTTCTCCATGTGTTCCCTTGCTCCCCACCCCATCATGGTCTTTTCTCCCAAAATAAAAGGGCTACAATTTGAGCCACTGTACAAACCCTGGTGGGTGGGCTTGGGCTGCCTTTGAAGGACACTGTGGCATTTAGCATTTTTTAAATAGTATTTAATAGAGTTGACCCAGAGAGGGAGAGTAAGTGAGCACGTTCATAAATCTCAGCTTCCCCCAGGGTCTGGATGAAGGTCTTCAAATTAAACTGTTGTTGGGTGAGAAGTAATTTCATCATGTGAGAGAATTTTAATTCATGAGTCCTTTTGACCTTTCTTGGAGGAATATGGTTATTGTTTTTTTTTTTTTTTTCCAGTGAGCTTATGGAAAACCTGATGCTCAGTGCGGAATGACTGAGCAGAATGGTTCTGCATTGGAATTTGGGGGTGGGGGGGTGAGCTGCTTCTCTCCAGCTACACGGGGTGGGGGAAGGGGCAGAGATGCCACTGCCGTTTACCAGTGATGCAACGGTCTGAGCACACAAAGGTCACTTCTCTCTTCTCTGTGTATGCCCAGACGGAGGAAAGGACACCATCCTTCCGATTGTGGACAAGGATCCTGGTGTTCGGTTTGTTTGCCCCCTAAGGCGACATCCAGACAGATTGTCCCTGCTTCCTGAGGCCCCTTCCTTCTGCTTCCTGTTTTTCTGACACTTAAATCTCAAATCATCTCTCTGGGAGTTGGGGGTCTAGTTAAGAGGGAAGGTTTGGGGACTTTCCTGGTGGTCCAGTGGCCAAGATTCCACATTCTCAGTGCAGGGGGCCTGGGTTCCACCCCTTGTCGGGGAACTAGATCTCACGTGCTGGAACCAAAGATCCTGCATGCTGAAAGAAAGGTAGAAGATCCCACGTGATGCAGCTAAGCCCTAACACAGCCAAATAAGTAAATATTTTTTTAAAAAAGGAGGGAGGAGCTGCGTGAAGACCAGAGGGCTGAGAACACTGCAGAATCCTTGAACCAATTTAGATTATTCAAATGAGTTACAGTGACAAGGAAAAGTATGGCTAGTAAGTTTTTGTTTCAAAGCTTTTAGGAAACTATTGCCTTATAGACTAAATTACCAAACTGAGCAGGTGTGGGGATCCTGAACAATAACATCAATTTAAATTTTTCCTTATCACTAAACTATTGAATTCCGTGGGTCAGGGGAAGAAAACATAGGAGAAGAGCCACCCATTTTATCTTGATTAGGTCTTTTTTAAAGAGCTCCTTGGCTGTGATGGGCTAGCCTTGGCCATGGCAGCACAATTCATTCATCCACTCACTGATTATTCCCAGAGTGTTTGGGGGGTCTAAAAATTAAGTATAATTTTAACACCACATTTCAAAGAAAACAGTTCTAAGAGTTAATACTGTTTGTAATGTTCCAAAAGTAAAAATACAATTTATATATAATTGTATACACACACACACACACACAGAAACGTTCTCTTGGAGTTAAAAGAAGTGCCATAGCTTTTATTTGTCAGGCAAATATTTGTATGAATTTGACTACACAGCATCTAAGTATTCCTTTTTATTTAAAAATTTTATTTATTTTTTACAGTAGGTCCTTGTTGGTTATGTATTTTAAATATAGCAGTGTGTACATGTCAACCCCAAACTCCCAATCTCTCCCTTTCCCCCACCCTACCTATCTGGTAACTGTAAGTTCTTTTTTTAAGTCTGTGAGTCAACTTCTGTTTTGTAAATAAATTCATTTGTATCATTTTTTTTTTAGATTCCTCATCATTTCTTAAAGATTCCTCATATCAGCGATATCATATGATATTTGTCTTTCTTTGACTGATTTAGTATGATAATCTCCAGGTCCATCCATTTGCTGCAAATAGCATTATTTCATTCTTTTTAATGTCTGAGTAATATTCCCTTGTATATATGTACCACATCTTCTTTTGAAATACTTACTGCGTGCCCATCAGTGTGTTGGAGACACAGTGACGATTGCACCTGGGTTCATGTTCCCCAGGGGCTCAGCAGGGTGTTGTTGGCAAATTTCAGGCAAGGCCACTTGTTCCTCCCTGATCCGGGCATATTTATACTGGAGGGGGAACCACAGACGGGCACTGGAGAAAGAGCAGGGTTAGTTAGATGTGCAGAGAGGCTTCCAGGTGGGGAAACAGTGTGTGAAAAGACCTTGGGGCATAAGAGACTGTGGGCCATTTGGGGAACGCCAACGAGTGGAGGCAGATACCGTCGTCCCTTGCCTATTGACTCAGTACCGCAAAGAGGGGAGCAGGGGGGGTCCCTTCAGCTTGTCTGTCTTCTCCAGCTTCCACGTGTTTTCACTTATAGGGAGACTTCCCAATAGAGCTTGAAAAAGGGGCCCCTCCCCAAATTGCTAATGAACTGAAGAAAGTACAGAAGACCTAGGGACTCATCTTGTGTTTGTTTAACTGATATCCGTAAAACACAGCTTTCTGAAGGAGAGGGATGAGATACTGACGTGCAGGGAAATTGAGTACAGGCCCTCCGGTTGTTTTGTCTTTAGCTGCAGTTAAGATGCTAATTTGAGGCGCTATTTGACGCTTTTCCAACAAACTATGAAACTGTAGGGGAGTCCTAACAAATGACAAGCCCACACACTCCAGAGGTCACTTTCAAACACAAAGGCGTTTTTACCGTTCGTGATGGTTCGGTGTGGGACATGAATGTGTGAAGCAGAGAGTCCCTTTCTTTCTGAACAG
Seq C2 exon
GTGTCAGAACATTAAAGACAACACCATTGGCATTGAGGAGAACGGCGTCTCCCTCACCTGCCGCTTCCACGTCACGGTCTTTAAGTTCATTGGGGATTATGATGAAGTCCACCTGCACTGTGCAGTGTCCCTCTGCGATTCAGAAAAGTACTCCTGCAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(32.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development