GgaINT1027467 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3532346-3533026:-
Coord C1 exon
chr24:3532778-3533026
Coord A exon
chr24:3532509-3532777
Coord C2 exon
chr24:3532346-3532508
Length
269 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AGCTTTTGTCCTGCTCACAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
TGTGATCAACCTGACAGTGCCAACGCAGGAAGGGAGCTTCACGACCAAGATGGCCCTATACAAGAACTCCTCCTACAAGCACCCGTACCGGCAGGGGGAGGTGGTGCTGACCACACGGGATGTGCTCTATGTGGGGGTCTTTGTGGTGGGGGCTGACTCCAACCACCTGATCCTGATGCTGAACAAGTGCTATGCAACGCCCTCGCGGGACAGCAATGACAAACTACGCTACTTCATCATTGAGGGAGG
Seq A exon
GTGAGTGACTGCAGGCGCCTTGGTTTGGTCATCTGTGGGAAGCATAGCTCCACAGGACCTACCACGAAGACACCTAGGTCTATCCTAGCCAAAACTGGCATGCGTCACAGGGGTGCAGAAACATGGGTCTCATATAGGTACAGTGGCATCAAAGAGAATAGCTGAAGGATTTGGTCGAGGGGGTCTCATGGGGACAGAGGCAAGCAGTGCTGCTTGAGGAAGGATCCTAGTCACAGAATCACCACGGCCAGCTTTTGTCCTGCTCACAG
Seq C2 exon
GTGTCAAAACTTGAAGGACAACACCATTGGCATAGAGGAGAACGGGGTGTCCCTGACCTGTCGCTTCCATGTCACTGTCTTCAAGTTCATCGGGGACTACGACGAAGTCCACCTGCACTGTGCTGTTTCACTGTGTGACTCGGAGAAGTACTCCTGCAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(32.5=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGAGCTTCACGACCAAG
R:
GACATGGAAGCGACAGGTCAG
Band lengths:
294-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]