GgaINT0141472 @ galGal3
Intron Retention
Gene
ENSGALG00000000154 | DENND2D
Description
NA
Coordinates
chr26:1015066-1015330:+
Coord C1 exon
chr26:1015066-1015178
Coord A exon
chr26:1015179-1015260
Coord C2 exon
chr26:1015261-1015330
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
TGCACTGTATCTCCTTGCAGCGA
3' ss Score
10.34
Exon sequences
Seq C1 exon
CGTGAGAACCTCCTGAAGGGTCAGAAGGAGGAGGAGGAGCGGCTCCTGCAGGCCATCCCCCTCTTCTGCTTCCCCGATGGCAACAACTGGGAGCCCGTCACCACCTTCCCCAG
Seq A exon
GTACCTGCCCTGCTGTGGTCCCACCCGGAGGGCTGTGGGCTGTCAGAGCTGCCCCGTGCCCATGCACTGTATCTCCTTGCAG
Seq C2 exon
CGAAACCTTTTCCTTTGTCCTGACAAACGTGGATGGCAGCAGGAAGATTGGTTACTGCAGGAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000154:ENSGALT00000000210:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
NA
C2:
PF0345613=uDENN=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGTCAGAAGGAGGAGG
R:
CAGCCTCCTGCAGTAACCAAT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]