HsaINT0046775 @ hg38
Intron Retention
Gene
ENSG00000162777 | DENND2D
Description
DENN domain containing 2D [Source:HGNC Symbol;Acc:HGNC:26192]
Coordinates
chr1:111197920-111198742:-
Coord C1 exon
chr1:111198630-111198742
Coord A exon
chr1:111197990-111198629
Coord C2 exon
chr1:111197920-111197989
Length
640 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCTTGTCTGCTCTTTCTTAGGGA
3' ss Score
10.03
Exon sequences
Seq C1 exon
CGGGAGAACCTGCTTCGGGGTCAGCAGGAGGAGGAGGAGCGGCTGCTCAAAGCTATCCCCTTGTTCTGCTTCCCAGATGGGAATGAGTGGGCATCACTCACCGAGTATCCCAG
Seq A exon
GTAATTGCTCAGCCCTGGGCAAGGGTATTGGATTTGGGGAGAAGGAACATGTGTGAGTTCTGTGGCTCCTGTAGCCTCCCTCACTGCTGTCATTTGTTGATTTTCGGCCTGGGAGTGTAATTGATTTGTTTGAAAACATCTGGCCTGGGGTCCCTCAAGGCCAAGAATATGAGCTATCAGTTTGATCAGTCACTTCTGTCCAAAGAGCCAGATTCTCCCACCTGTCCTAGAAGCAATAGTTGCTGCTTTTAACTCTGCTACTGGCCCAAGCTGGACTTAGCAGAAAGCAGTTAGCCTCCAAGAAGGCGACGTAGCAAAGGCCCTTCTAGCATGAGCCCTGGAATTTGACTGCTTGAGCTTTGACTTCACTATTTATGAGTTGAGTGACCTTGAATAAGAAGCACCCTCTGGCCTCAGTTCCTTCATCTTTAAAGTGGGAATAATTACTGAACCTACCTCAAAGAGTTGTTTTGACAATTAGATGAGATGATGTGTTTAGGGCCTGACACCAGTGAGCCCTTACTCCTGTGATTAATCAGCAACTCCCCTTTGCCCTCCTCTCCACCCTCTAGTGCTGACCACTTTCCTGTTTTAGGATTCAGTGAGCAATACAAATCAAGCCTTGTCTGCTCTTTCTTAG
Seq C2 exon
GGAGACCTTCTCCTTCGTTCTGACCAATGTGGATGGGAGCAGAAAGATTGGATACTGCAGGCGCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162777:ENST00000369752:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
NA
C2:
PF0345613=uDENN=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAACCTGCTTCGGGG
R:
CAAGAGGCGCCTGCAGTATC
Band lengths:
182-822
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development