MmuINT0048300 @ mm9
Intron Retention
Gene
ENSMUSG00000027901 | Dennd2d
Description
DENN/MADD domain containing 2D [Source:MGI Symbol;Acc:MGI:2181193]
Coordinates
chr3:106290769-106291559:+
Coord C1 exon
chr3:106290769-106290881
Coord A exon
chr3:106290882-106291489
Coord C2 exon
chr3:106291490-106291559
Length
608 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ATTGGTCTGCTCTCTCTTAGGGA
3' ss Score
8.98
Exon sequences
Seq C1 exon
AGGGAGAACCTGCTCCGAGGTCAGCAGGAGGAGGAGGACCGGTTGCTCAGTGCCATCCCTTTGTTCTGCTTCCCTGATGGAAATGAGTGGGCACCACTCACAGAGTATCCCAG
Seq A exon
GTAACCACTCAGCCTGCAGGAAAGGGTATCAGATTTGGATAGAAGGGCAAATGCGTGGCTCTTGTCCCCTCACCTGGTATGAATGCTGAGTTTTTGCCAGGGAAATATTTTGCTTGGGATCCTTTAGACAAATGATTGAAGCTGTGACTTGACTTTCTCTCTGAAGACTTTAAAGAGTCTCTTACCTCTTCCTAGAAGAAGAAATTGCCTTTTAAAAATGTTTTTATTTATTTATCTTTTTCTACTCTGGACTGGAGAGAAAGACTTTGGCCTCTACAATAAGGAAATGGTTCTTGCTTGCATCATGAACACTGGAAGCAGACCAGGACTTCAATTTTTAGATAAGAAGTAACCTCAGAGCCTTACTTACCTGGTCCTTAAAGTGGTGATAATAATTGAACCTTCTTCAGAAATGTTTAGTTGAGTCTCGAATGAGGCGATGCATTAGAGCTTGACACCATCAAGTGCTTAGTAAGTGACTGCTGTGATTATCCCCATGATTAATCAGCAGCTCCCCTTTGTCTTCCTCTCCCCTCCTCTGAAGCTGACTTCACTCTTGTTTTAGGATCCAGTGAGCAAATGAACACCATTGGTCTGCTCTCTCTTAG
Seq C2 exon
GGAGACCTTCTCATTTGTCCTGACCAATGTGGATGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027901-Dennd2d:NM_028110:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=FE(52.1=100)
A:
NA
C2:
PF0345613=uDENN=FE(32.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: