GgaINT0141543 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4449432-4450124:-
Coord C1 exon
chr26:4449924-4450124
Coord A exon
chr26:4449543-4449923
Coord C2 exon
chr26:4449432-4449542
Length
381 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
ACATTGCCTTGCTCCCGTAGAGC
3' ss Score
9.63
Exon sequences
Seq C1 exon
AACTTCCTGCGGTGCCAAAACAACAAGACCAACTACAACCTGGTGTGTGAGACGCTGCAGTTCCTTGACATCATGTGTGGCAGCACCACGGGCGGGCTGGGGCTGCTGGGCCTCTACATCAATGAGTACAACGTGGCCCTCATCACGCAGACCCTGGAGACCCTGACCGAGTACTGCCAAGGGCCCTGCCATGAGAACCAG
Seq A exon
GTCTGTGGTGTTGCTGTTCCTGTTCCTGAGGCATTTCACCATCCATCAGCGTGCCCAAGGGGGCATTTTGGGGGAATGCATGGACAGCAGCAGGGATAGGGCCAGTTTTGGGATTCAGGGTGTGAAGAAGAGCAGAGCTTGGGGAGCAGGGGTACCCCATGGTGCACAGGGATGGTGTGTGGGTTTTGAGCTACTGCTGGGCTGGGTAATATAGTGCTTAAATAATGCTGTGTTGGAAACGGTGTCGTTGCCAGGAAGGGAAAAGGTTTAGGGCTTCTGGTTCAGTGCTGTAGGCAAGGCACCATTTTGGAGCTGTGTTGGATGGTGAAGCTGGGAAGGATGGCAGCATCTATAGGACAAAACATTGCCTTGCTCCCGTAG
Seq C2 exon
AGCTGCATCGTGACCCACGAGTCCAACGGGATCGACATCATCACAGCCCTCATCCTCAATGACATCAGCCCCCTCTGCAAGTACCGGATGGACCTGGTCCTGCAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(54.5=100)
A:
NA
C2:
PF084546=RIH_assoc=PD(18.2=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCCTGCGGTGCCAAAA
R:
CTTCAGCTGCAGGACCAGGTC
Band lengths:
312-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]