HsaINT0083329 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33686053-33686519:+
Coord C1 exon
chr6:33686053-33686253
Coord A exon
chr6:33686254-33686408
Coord C2 exon
chr6:33686409-33686519
Length
155 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCACTGCCTCCTGCCAGACT
3' ss Score
8.03
Exon sequences
Seq C1 exon
AACTTCCTGCGCTGTCAGAACAACAAAACCAACTACAACTTGGTATGCGAGACGCTGCAGTTCCTGGACATCATGTGCGGCAGCACCACGGGCGGCCTGGGGCTGCTGGGGCTCTACATCAATGAGGACAACGTGGGCCTCGTCATCCAGACCTTGGAGACCCTCACTGAGTACTGCCAGGGCCCCTGCCATGAGAACCAG
Seq A exon
GTGAGCTGTCCTGGTGGCATAAGTGGCAGCCAGGGTGGCAGTGTGGACATGTGGGTAGATGGAGCCAGCTGGGGCAGGGAGAGAGGCTGAGGTCTCTGGAGCTGCCACTATTCTGAGAGGGCCTGGGCCCTGTGTCCCCCACTGCCTCCTGCCAG
Seq C2 exon
ACTTGCATTGTGACTCACGAGTCCAATGGCATAGACATCATCACCGCACTGATCCTCAATGACATCAGCCCCCTGTGCAAGTACCGCATGGATCTGGTGCTGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
NA
C2:
PF084546=RIH_assoc=PD(18.3=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGTTCCTGGACATCAT
R:
GATCCATGCGGTACTTGCACA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development