RnoINT0076763 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5703850-5704285:+
Coord C1 exon
chr20:5703850-5704050
Coord A exon
chr20:5704051-5704174
Coord C2 exon
chr20:5704175-5704285
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTCCCACCGCCTCCCGTCAGACC
3' ss Score
7.1
Exon sequences
Seq C1 exon
AACTTCCTGCGCTGTCAGAACAACAAGACCAACTACAACCTCGTGTGTGAGACCCTGCAGTTCCTGGACATCATGTGTGGCAGCACCACAGGGGGCCTGGGGCTGCTGGGGCTCTACATCAACGAGGACAATGTGGGCCTGGTCATCCAGACCTTGGAGACCCTCACAGAGTACTGCCAGGGCCCGTGCCATGAGAACCAG
Seq A exon
GTGGGCTGCCTCAGCGTGGCCGTGGGCTTTGTGAAGGGGCTGAGTGGGTGGGGGTGGGGGTGGGGCTGCGGGGCCACCATGACTGACAGGTCTGGCGCTCGCATCTCCCACCGCCTCCCGTCAG
Seq C2 exon
ACCTGCATCGTGACTCACGAGTCCAACGGCATTGACATCATCACGGCGCTGATCCTCAATGACATCAGCCCGCTCTGCAAGTACCGCATGGACCTGGTGCTGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(54.5=100)
A:
NA
C2:
PF084546=RIH_assoc=PD(18.2=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGAGACCCTGCAGTTC
R:
GTCCATGCGGTACTTGCAGAG
Band lengths:
252-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]