GgaINT0141655 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1594465-1594690:-
Coord C1 exon
chr26:1594609-1594690
Coord A exon
chr26:1594529-1594608
Coord C2 exon
chr26:1594465-1594528
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTGCTCTCTGTCCCCCCAGACA
3' ss Score
12.17
Exon sequences
Seq C1 exon
GCCAGGGGATGACCAGAGCCCCTTCCACCCTCAACCACTACATCCACCTACAGGAGAGGCCTATCAAGCAGACCATCAGCAG
Seq A exon
GTAGGGGGGGACAGGGGCGAGCACAGCCCTGTGCTGTCCACCCTCCTCACAGGGCTGAGCTCTGCTCTCTGTCCCCCCAG
Seq C2 exon
ACAGGCTCTGAGTCTCCTCTTTGACACCTTCCACAACGAGGTGGATACATTCCTGGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGATGACCAGAGCCC
R:
CTCAGCTGCCAGGAATGTATC
Band lengths:
144-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]