DreINT0114244 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23420991-23421223:-
Coord C1 exon
chr11:23421144-23421223
Coord A exon
chr11:23421055-23421143
Coord C2 exon
chr11:23420991-23421054
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTTTGTGTGTGTGTAACAGGGA
3' ss Score
9.66
Exon sequences
Seq C1 exon
ACTGAGGATGATGATACTCCATCCACCATGAACCACAGTATTCTACTGCAAGAGAGGCCAATCAAACAGACTGTGACCAA
Seq A exon
GTGAGTAAAATGGAGGAGGTTTTGGGCTGTTGTGGTTTTAGCATTCATACTTTCTGATGAAAAAATCTTTTTTTGTGTGTGTGTAACAG
Seq C2 exon
GGAGGCACTGACACTTCTCCTAGACACTTTTCACAACGAGGCAGAGTCTTTTCTTTTATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGATGATGATACTCCATCCA
R:
TCTGATAAAAGAAAAGACTCTGCCT
Band lengths:
143-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]