GgaINT1021608 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1742416-1742638:-
Coord C1 exon
chr26:1742559-1742638
Coord A exon
chr26:1742480-1742558
Coord C2 exon
chr26:1742416-1742479
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TCTGCTCTCTGTCCCCCCAGACA
3' ss Score
12.17
Exon sequences
Seq C1 exon
GCCAGCGATGACCAGAGCCCCTCCACCCTCAACCACTACATCCACCTACAGGAGAGGCCTATCAAGCAGACCATCAGCAG
Seq A exon
GTAGGGGGGGACAGGGCGAGCACAGCCCTGTGCTGTCCACCCTCCTCACAGGGCTGAGCTCTGCTCTCTGTCCCCCCAG
Seq C2 exon
ACAGGCTCTGAGTCTCCTCTTTGACACCTTCCACAACGAGGTGGATACATTCCTGGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCGATGACCAGAGC
R:
CTCAGCTGCCAGGAATGTATC
Band lengths:
144-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]