BtaINT0111697 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2020646-2021172:-
Coord C1 exon
chr16:2021093-2021172
Coord A exon
chr16:2020710-2021092
Coord C2 exon
chr16:2020646-2020709
Length
383 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCTGTCCCCAACTCCCCAGGCA
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTGAATGATGACCAGAGCCCCTCCACCTTGAACTACCTCGTCCACCTGCAAGAGAGGCCAGTCAAGCAGACCATCAGCAG
Seq A exon
GTGAGAGCGGGTGCCGTCCTGGGTGTGGGCCAAGCAGAGACCACGAGGGGACCCTAGAGGCACCCCCGCTTGCCTTTCTGCCACGGCCCGGGCTTCTTGCACGTGTCGGGCACGGGGGTCCAGAGTCTCACAGGAGAAGATCCCCACTCCAGGGTGTGTGACGTACCTTCCCTTAGTACTTTACTACGTTCTCTAAGTAAGAGGGGGCCCACAGAAGGGACTTCTGGCCTTCAGTCTGCATGGGACTGACGGGAAGAGCGGAAACCCCTTTAAACCAGAGCCTGATTCCTGAGCTGAGGAGGAGGAGGGAGAAAATGGGTCTTTCAGAACACTGGATCTGTCCTGACTTCTCCTATGACATTTCCCTGTCCCCAACTCCCCAG
Seq C2 exon
GCAGGCCCTGAGTCTTCTGTTCGACACTTACCACAATGAGGTGGATGCCTTCCTGTTGGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development