GgaINT0141657 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1593012-1593981:-
Coord C1 exon
chr26:1593835-1593981
Coord A exon
chr26:1593302-1593834
Coord C2 exon
chr26:1593012-1593301
Length
533 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTGCCCGGGGTCCCCTCCAGTAT
3' ss Score
4.95
Exon sequences
Seq C1 exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
Seq A exon
GTAAGGGCTGAGGAAACCAGGGGTGGGTGCAGAGGGAAAGCCCCTCTTGCAGGCTGATCCCATTCGCTCTTTTCCTTTACACCACGTGGAAAATTCCTCAATAGCTCAGAGCAGGCAGCAGCTGAAGGGCCGGGACCTTGGTGCTCACCCCGGCTGCTTACGTAAAGCTGCTGGCTTGGAGAGCTGCTGCCGGCCGCAGCGACGCATGGGGCTCATGCTGATATTGCTCTTGTGGTTTTCTTTTCTTTTTTCCTCTGCAGGATCCAAATGTTCTGGCCAAGAGGGAAAATCGAGGTATTGCAGTTCTCCTCCTCCCCTTCTGGGCTGAAGTTCTCGGTGCTTTTAATCTTCAAACCCCTCCTCCTCCTCAATTATTAAGGCCGAAAATGGGGTTGAAACCCTTCTTAAGGAAAGAGTTCTTCAGGAGGCTGTGCCTATTGTTCCTCCCCGTCAGCTCAGCAAAGTGGGAGTCTGCAATTCCTGCAGTTCCTCCTCACGCCCCACAGCAGAGCCCTGCCCGGGGTCCCCTCCAG
Seq C2 exon
TATCCCAGCCCCATGTTAGGGCCACCCTATGGGACACAGCAGGGCTGCAGGTCTGGGGCAGCTCCACGTCACCCCTCTCCTTTCTCCCCTGCAGAGAGGATCGTGGAGAGCCTGACGGCCGCCATCCTGGACCTGGTGGGGCTGTACTGCAGCACCTTCAATGCTGACTTCCAGACAGCTGTGCAATGGAGCCGGGAGCACGGCGTGGTGCAGGAGGCTCGCCTGCTCTCCTGCCCACTCTCCTTCACCGTTTACGCCACACACCGCATCCCCATCACCTGGGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.276
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079219=PI3K_C2=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCTGCCGTTGAGTC
R:
GGCGTAAACGGTGAAGGAGAG
Band lengths:
347-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]