BtaINT0111699 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2015751-2018454:-
Coord C1 exon
chr16:2018308-2018454
Coord A exon
chr16:2015785-2018307
Coord C2 exon
chr16:2015751-2015784
Length
2523 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CCCTCCTTTCTCCCCAACAGGAT
3' ss Score
12.59
Exon sequences
Seq C1 exon
GGGGACTTCCCACTGAAGGCCGACAGGGTGGTCCAGTCCGTCAAGGCCATCTGCAACGCCCTAGCCGCTGTGGAAACCCCTGAGATCACCAGCGCTCTCAACCAGCTGCCCCCCTGCCCTTCCCGAGTGAAGCCTAAAATCCAGAAG
Seq A exon
GTAATGGAGTGCTAGCATGGGGAAGGAGGAGGGGAGTAGCCCCGGGAATCAGGTGGCGGGGTGTTCACTTACTGAAGGGCTCTTCCCTCCACCTGCATCTTTCATGTCTGAACACTCGGTCACAAAGTTCCTGGGAAATGGAGGCCAAGTGTGTTGCCTTTCCCCGAGTCTGAGCGCGGCCGGGGCCTGCCACCAGGACTGAGGCCAGGAATGCAGGCAAAGGCTGCTCACAGTCACTGAGGCGCTGCCTGGCCGTTTGCATACCCACTGGGGTGCAAGACCAGAATCTCCCCGAGCCAGGGACTGGAGGCGCCACCGCAGGGGCTGCATGCTGTGCAGACAGGGCCAGCTGCGTGGCAGGTGCTGCGATCTAAACGCGAGTGGCCCAAGGGCTGCACCGGCTCATTTGGGTGGACGCGATGGCTGTATCCTGGCTCGTTTGGGTGGACGCTACGGCTGTATCCTGGCTTGTTTGGGTGGACGGGAGGACTGTACCGTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGCATCCTGGCTCGTTTGGGTGGACGTGACGACTGTATTCTGTCTCGTTTGGGTGGATGTGATGGCTGTATCCTGGCTCGTTTGGGTGGATGTGATGGCTGTATCCTGGTTCATTTGGGTGGATGGGAGGACTGTATCCTGGCTCATTTGGGTGGACATGATGGCTGTATCCTGGCTTGTTTGGGTGGACACAATGGCTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGTATTGTGGCTTGTTTGGGTGGACGCGACGGCTGTATCCTGGCTTGTTTGGGTGGACGTGACGACTGTATCCTGGCTCGTTTGGGTGGATGTGATGGTTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGTGATGGCTGTATCATGGCTCGTTTAGGTGGACACAGTGGCTGTACCCTGGCTCGTTTAGGTGGACCGGAGGACTGTACCCTGGTTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCATGGCTCGTTTGGGTGGACATAATGGCTGTATCGTGGCTCATTTGGGTGGACGTGATGGCTGTATCCTGGCTCATTTGGGTGCACGGGAGGACTGTATCATGGCTGGTTTGGGTGGGCGGGAGGACTGTACCCTGGCTCGTTTAGGTGGACGGGAGGACTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGTGATGGCTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCATGGCTGGTTTGGATGGGCGGGAGGACTGTACCCTGGCTTGTTTAGGTGGATGGGAGGATTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGTATTGTGGCTTGTTTGGGTGGACGCGACGGCTGTATCCTGGCTCGTTTGGGTGGACGTGACGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCATGGCTGGTTTGGATGGGCGGGAGGACTGTACCCTGGCTTGTTTAGGTGGATGGGAGGATTGTATCCTGGCTCATTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTGCCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTAGGTGGGCGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATACTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTCGTTTGGGTGGACGGGAGGACTGTACCCTGGCTCGTTTGGGTGGACGGGAGGACTGTATCCTGGCTTGTTTTGGTGGATGTGATGATTGTATCATGGCTCGTTTGGGTGGACACAATGACTGTATCGTGGCTCGTTTGGGTGGATGCGAGGACTATCTCCTTGCTCTGGCTCACTGTCCCTCACACGGATCTGGTACAGACTGTCACTCTATCCTCCCTGGGGAACCTCTGCTCCTTGAATTTCGGTCCAGCCTGGTCCAGATGAGGGCGGCTATGAAAAGCTGTGATGGAAAGGACTGTGGCCCTGAAGCTCACCTTCCCCTCCTTTCTCCCCAACAG
Seq C2 exon
GATCCCACCGTCTTGGCCATGAAGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development