MmuINT0119733 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134973903-134974829:+
Coord C1 exon
chr1:134973903-134974049
Coord A exon
chr1:134974050-134974795
Coord C2 exon
chr1:134974796-134974829
Length
746 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GGTCTTCCTTCCCCCAACAGGAT
3' ss Score
11.02
Exon sequences
Seq C1 exon
GGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTCAAGGCCATTTGCAATGCTCTGGCTGCTGTGGAGACTCCCGAGATCACGAGCGCTCTCAACCAGCTGCCTCCCTGCCCCTCGCGCATGCAGCCAAAAATCCAGAAG
Seq A exon
GTACGGAGCCCCAGGTGTTAGCGTGAGGAAGGGACAGTGAATGCTTGGGTAACTGGGCTGTGGCTTGTCACGTTACTTGGTGGCCACCTTACTAAAAAGACTCTCTTAAGCAGCTAGAATTTGGGAGGCAGAGGCAGCTGATCTCTGTTAAGCCAGGCTGACTTACGTAGTGAGTTCCAGGACAGCCTGGGCTACACAGTGAGACCCTGTCTCGAGACAAATAAAAAAAATAGATGAAAGGTTCTCCACTTCTGTCATTCATGTGTGAGCAGTTCAGACAAAAGAGCTCCTGGGAAATGGGTGCCAGGCCTGTCCCTCCTCTTGAGCATAGAGGTTGGGCTAGCTTCACCTCACGAGAATAACCACATGAGCCAAGGCCAGAAAGGCTTTGCCTGAGAGTTTGCTCGTCTAGGAGGGTGCAAAACCAAGGAGGGAAGGGGATCCCCAGAGCCAGGGATTCAGTGGATCTGTGTGCAGTAAGGGCAGGCGAGCTAGCACTACAGATCCTGTCTCCCCAGCCTTGCGGGGCTCTTTCCTTAGGGGAAGCATGGCTTTTTATCTGCTTACTCCATCCACCCTGTGGTTGTGGAACAGACCATCACTCCCTCCCTCTCTGGGGAATCTCTGCTCCTCACATTTCAAGCCCTGCCGGGGCCCAGATGAGCACAGCTGTGAAAAGCCCTACCAACTGGCATTAAAAATGGACCCGGGCTCTGTCTGACCCTCGGTCTTCCTTCCCCCAACAG
Seq C2 exon
GATCCCAGCGTGTTGAGTGTGAGGGAAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: