GgaINT1021610 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1741492-1741932:-
Coord C1 exon
chr26:1741786-1741932
Coord A exon
chr26:1741526-1741785
Coord C2 exon
chr26:1741492-1741525
Length
260 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTCTTTTTTCCTCTGCAGGAT
3' ss Score
13.81
Exon sequences
Seq C1 exon
GGAGACTTCCCACTGAAGGCAGAGCGGGTGATCCAGTCGGTCATGGCCATCTGCAACGCCTTGGCTGCCGTTGAGTCGCAAGAAATCACAACAGCCCTCAACCAGATGCCCCCCTGCCCCTCCCGCATGCAGCCCAAAATCCAGAAG
Seq A exon
GTAAGGGCTGAGGAAACCAGGGGTGGGTGCAGAGGGAAAGCCCCTCTTGCAGGCTGATCCCATTCGCTCTTTTCCTTTACACCACGTGGAAAATTCCTCAATAGCTCAGAGCAGGCAGCAGCTGAAGGGCCGGGACCTTGGTGCTCACCCCGGCTGCTTACGTAAAGCTGCTGGCTTGGAGAGCTGCTGCCGGCCGCAGCGACGCATGGGGCTCATGCTGATATTGCTCTTGTGGTTTTCTTTTCTTTTTTCCTCTGCAG
Seq C2 exon
GATCCAAATGTTCTGGCCAAGAGGGAAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCACTGAAGGCAGAGC
R:
CGATTTTCCCTCTTGGCCAGA
Band lengths:
174-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]