GgaINT0142525 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1595916-1596268:+
Coord C1 exon
chr27:1595916-1596037
Coord A exon
chr27:1596038-1596216
Coord C2 exon
chr27:1596217-1596268
Length
179 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
CCATGTGTTGCTTCCTACAGCCT
3' ss Score
8.3
Exon sequences
Seq C1 exon
GAGAGGTGAACATCACCATCAGCACCGAGGCCATAAGCTCTGAGGAGCTCTGTGGCAATGAGAAGCCTGTGGTGCCAGCCCAGGGGCGTGTAGACACTGTGATAAAGCCATTGCTGGTGCAG
Seq A exon
GTCAGACAAGTTATGGGGGATGAAAGAGGGATGAGGGCTGAACAAACCTGGGGGTGCGATGGGAAGACCCCATCACGCTGTCTTGGGAGTGGGACAGCACCAAGTGTCGCTGCAGGGATGGCCCTGGGGGACATGAGGACATGGAGGTCACAGGATTGACCATGTGTTGCTTCCTACAG
Seq C2 exon
CCTGGTGGCATCCTGGTGGAGAAGGCACACAGCTCCCTGCTCTGCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATCACCATCAGCACCG
R:
CTTCCTGGCAGAGCAGGGAG
Band lengths:
168-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]