GgaINT0142529 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1596943-1597298:+
Coord C1 exon
chr27:1596943-1597024
Coord A exon
chr27:1597025-1597141
Coord C2 exon
chr27:1597142-1597298
Length
117 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TTCCCTCTGATGCCTTGCAGGTT
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTTACCAACGAGAGCTGCTCTACAAACACAGCGACGGCTCCTACAGCGCTTTTGGGGAGACAGATGACAGCGGCAACACCTG
Seq A exon
GTGAGGGTCCACACGGCATGGGGCAGCGCGGTGCCATCCCCATCACCTCCTCTTGCCACCAAACGCACCTCCATCCCCATCTGTCCCTCATGCTCCCTTCCCTCTGATGCCTTGCAG
Seq C2 exon
GTTGACAGCATTTGTCCTCAAGTCTTTTGGGCAAGCGAGAGCCTTCGTGGCCATCGAGGAGCGGCACATCACGGACGCGCAGCACTGGTTGCAGAGGCAGCAGCAGGAGTCGGGATGCTTCCGCAGCGTGGGCAAGCTCTTCAATAACGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.1=100)
A:
NA
C2:
PF076789=A2M_comp=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACGAGAGCTGCTCTACA
R:
GCAGGGCGTTATTGAAGAGCT
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]