GgaINT0142537 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1600641-1600956:+
Coord C1 exon
chr27:1600641-1600781
Coord A exon
chr27:1600782-1600865
Coord C2 exon
chr27:1600866-1600956
Length
84 bp
Sequences
Splice sites
5' ss Seq
ACAGTACGG
5' ss Score
3.47
3' ss Seq
CTCTGCCTTTCCTTTTCCAGGTA
3' ss Score
14.13
Exon sequences
Seq C1 exon
CCCACTTTCACTCCAGGTGACGCTGCGCTACAACATACCAGCACCTCCCAGCGCGGGGACATTCAACCTCCACGTAGAGACAGAGCCCAAAACGTGCACGAGTGATGCCAGCACCCACTTCCGCCTCCTCCTCCGGGCACA
Seq A exon
GTACGGTTTGGGGTCACCCCAAGGGTTTGGTGGGGGCCAGACAGCCCCCAGCCCAAATGCGACGCTCTGCCTTTCCTTTTCCAG
Seq C2 exon
GTACACTGGAAAGCGTGCTGCCACCAACATGGTTGTCATCGAGGCCAAGATGCCATCAGGCTACATCCCAGACAAGAGCTCGGTGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(25.0=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTACAACATACCAGCA
R:
GCATCTTGGCCTCGATGACAA
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]