GgaINT0143069 @ galGal3
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2249015-2251624:+
Coord C1 exon
chr27:2249015-2249080
Coord A exon
chr27:2249081-2251145
Coord C2 exon
chr27:2251146-2251624
Length
2065 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTTCTTCTTTCTGCTTCCAGATG
3' ss Score
11.84
Exon sequences
Seq C1 exon
GTCAGAATATGTTTGCTAATTTATATGTGAGGGGTGATGGCTCCAGAGTCGACTTCTTCACCCAAG
Seq A exon
GTAGGAGGCTGGAAAACGCATCCTCACCTCTTTTTGTCCCTGTGCTCCCAAGTTTTGTCACTAGCTCTTTCCAGCCAGTCTTTCTTGGAGCAGTGTGAAATGTGAAGTGTCTCCCAGTCACACATGGACCTCAGCCTGTCAGTTGCTTGTGTGGATACGCACAGTAAATTCCTTTGTGGAAGATCTTTTAGGATTAAGACTAGAGTGTGTGCTACACTGAGAGGAATGGAAGTGGAGAAGCTCTCTTGAATCTTGTTGCTTGTGGAATGTGCAGTCAGATGAACACGACTGGATTGAACTGTACTGTTCTCACACAGTGGTATGTTAGGAGCGTAGTTCATTATAGAGCTGGGGCGGGCTTCATTAGTTCCTTCCAGTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAGAGCTGGGGCGGGCTCCTTAGTTCCTTCCACCATTTAAAAGGGGATTACAGACAGGAGGGGAATCAACTTTTCCCTCAGGTAGATAGTGATAGGACAAGGGGAAATGATTTTAAGCTCAAGAAGGGAAGGTTTAGATTGAATATCAGGGGAAAGATCGTCACAGAGAAAGTGGTGAGATGCTGTAACAGCTGCCCAGGGGGGCTGTGGATGCCCCATCCCTGGAGGTGTCCAAGATTGGGTTGGGTGGAGCCCTGGGCAGCCTGGTCTAGTCCCGTATCTGGAGGTTGGTAGCCCTGCCTGTGGCAGGGGGGTTGGAGCTTGATGATTCTTTGCATCCATTCCAACCCAAGCCATTCTATGATTCAGTTGCTGCTTTGTGTTCGGCAGGAGTTGAATTTCTCTCTCCTTATCACCAGTCACACCCCCAGTCACTTCCACTGAGGGCCCATCTGCATAGTCTTGTTTTAGAGTACCGGCACAACTGCAGTGAACTGTTCTGTTCCCCACTGCACAAGTCTCGTTTGTCACAACAAAATTAATACTCAGTGCATGTTTGGCAAATGCTTCCCTGTGTCAAGCATCTGATAAAAGAGCACAAGCTGGGACCTGCTAGCTCTTTTCTCCAGGAGCTCCATACCAGTCACATGCTCCCAAGCTGCAGTTGAATGAACTCTCTGCTGCTCAGCAGGACTCAGACTGATTTTGCCCACGGCCACTGTGCTGGGGCACTATGATACTTATTTGCTTGGACAGGAATACTTAGCAATTTAGGTGTTGCAGCCTTGAGGGCCCTTAATGCTTTGATTGGGCCCCAGCTGGGTGTGTTTTTTTCAGGATTTTTTTTTCCAAACATAACCATAATGAATCCAGTTCCCCTCCAGCCCATACAGCAAAGATGTTATTGCCACCATTTTAAAAGCGTAGGTCTGATATCTGATCTGGTTCTTTGCTCTTGCAGACTCTGAAATCTCAATGGAGAGAGGGGGGAGGGGTAAGGAAGGGATCTGTTCCTACTCACTAGAAGGTGATCCTTCAATTGGTTACTAGAGGCAATACCAATGTCTGGAACTGTTATTGTTTTGTCAACTCTCTGTAACTCCAGTTGTCCTCACAGTACTTCTTTCCTTCCTTTGTAGAAGGTAAATTCAAAGGAAACTTATGAGACTGTAGTCTTATTTCCCCCATAACATAGTAGTTAAGTCCTGTCTGATCTTTACATTTCCCTGCCAGACAGAGACCATGAGTTTCCTCTGGCCCATCTTTCAACCCTGTTTAGCCCTCAGCGTGAACAGATATCAGTTAAATGAAAGCTGTAGCATCCTTCTCTTCTTCTTTCTGCTTCCAG
Seq C2 exon
ATGAATTAGATGATCTCTTCACAAGAGCTGGCCTGCAGAAAATACAGAATCTGGTTGATCGTCGACTGCAAGTGAACCGTGGGAAGCAAATGACAATGTATCGAGTATGGATCCAGTGCAAATACCAAAAGCCTGCTGGCCCTCAGCTGTGAGGAAGCAGGGCATGCTCTGTCAGATTTTATCCTCTTCGTGGCCATGTGCAGTCTCCTCCTGGTGAGATGTATTGTTGGGGAAGTCAGTGTGCACAGAACCTCAGTGCCTTTTATAGTGCCTAGCATCACTTCAAATGAGTTTTGCTAAGGACAAATGGTCTAGGAGGAGACCAACCACTGTTTAAGGTGTCTTGCTACTGGGCTGGGTTTTTAAAGTTTATAGTTTTTAACAACATAAGAAGTAGTCATGCTAAGAGCTCAACCAAGTTGAGTAGCAAGCCTTTCTTACTGTGGATTTCTACATGAAACAAGATCTTCAACCTCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.5=100),PF118993=DUF3419=FE(22.9=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(8.4=31.4),PF118993=DUF3419=PD(10.4=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]