BtaINT0092014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47521874-47523553:+
Coord C1 exon
chr19:47521874-47521939
Coord A exon
chr19:47521940-47522789
Coord C2 exon
chr19:47522790-47523553
Length
850 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
AATATCTCTTTCCAAACTAGATG
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTCAGTGTCTGTCTGAAAATTTCTATGTAAGAGGCGATGGCACCAGAGTGTACTTCTTCACACAAG
Seq A exon
GTACGACGCAAAAACACTTGGCTTTGTGCTGACAGCCCTCAGGACTAGCTTCCATATTCCTCCGTGTGCTTTCAGAAGTGACGTCATCTGGCCCCGCCTACCTTTTGCAGCCTCTTCCCTGCCCTTCCCCACCCCTTAGCCTACCCCCAGCCACCTGGAACTACTCAGTGTTCTCTCAGTAGGCTCAGCTTATATGAGCCTTTGGTCCCTGCCTTGTTCTTCTGCTGCCTGCTCTTCCTCTCCATCACTTTGTCCAAAACAGGACACATGCTCATTTTGCAAAAATGCACTGTAGCTGTTTCTGCTTCGAAGCTGGGTTGTACCTTAGGTGCACCTGAGTTTAAGTGAACCCATTGCTCCCTGGGTTCCAGGTGTAACTCAGAGCTGCTTGTCCTGCTGCCAGTTTTCACCTCCACCGGTGCCATATGAATACTTTGTCCCTGGGCCATCTTCAGGTCACATACTTTGCTGAACCTTTAGTGAGTGATGAAACCTCTCCCTTTAAAAAAAAAACAAAAAGAAATGGTTTTGACATAACATATCAATTTTTGCATATGATTGTAAGATGTACGTAGAACCCTAGAAAATTCTTTCCCATCAGCTGACTCTTAGAAAGGCTTTCCCGGTGCGTTCCAGGCCACCTTTCACACGTGGTTTGCCTTCCTCTGCCTAAACGAGGACTTGCTGCTACCAAGTCACTACTGCGATTGTAGGTAAACCATACTGCCCAAACCACTTAAAGTCTATGAGGCAGGACAGCAGTCTCACAGAGTACCATTTAGCATGGGGAGTGGTAGACACGGTGCTTTTTATTCAGGGGAAAATATGTAAATATCTCTTTCCAAACTAG
Seq C2 exon
ATGAACTGGACACACTTTTCACTACTGCTGGACTGGAAAAGGTTCAGAACCTGGTGGATCGCCGGTTGCAAGTGAATCGAGGAAAACAACTGACAATGTACCGAGTGTGGATTCAGTGCAAGTATCGCAAGCCTCTTGGGTCTAGCACCGGCTGAGAGGCAGGATCTGTGCTGACTCACAGGCTCGTTGGGCTTTTTAAAAAGAACATTCACAAATGGTGTCTTGTTATTGAACCATTCAAGGATTCAAAACAGATTTGAACCTGGGAAGAATTATTTTATATCAAGATTCTAACTGTTTTGCTTCATATTTGTGAAGCCCTGTGATACACTTTTCTCAAGTTTTTTTCTTATGTGGCGATCTCAATCTTTCTTGCCATTTTGTAACTTAATAATTGAAATGTTATTCATGGGAATCAGGAATTTATATCCATGTGAAAGTATTATATGATAAAGTGAATGACTGAGTTGCATTAAATTATCTGAGGATTCAGATATGTGGACTAAGCAGTTGATGCCTGGAAAGATAAATAAAAATCTCACTCAGTGATCATCAAGGAAGCAAGCTGGGAAGAATTGCCTGTCTTTGGATCTTTTCCTGACTCAGAAAAAAAGCATCAATATAGAGTGTCCCTATTAAATATTTGGTTGTGATCTCTGCTTAACCTTAGTTCCTTGGAATTTTAAGTAGTGTTCTCCCCCCACCCCCGCCCCCATCTTAAGTAACCTGTGTCTAAAAACATTAAAAAGATCTTCACTTTTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.7=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(8.5=30.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCACCAGAGTGTACTT
R:
TCACAGGGCTTCACAAATATGA
Band lengths:
358-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development