DreINT0095423 @ danRer10
Intron Retention
Gene
ENSDARG00000017359 | mettl8
Description
methyltransferase like 8 [Source:ZFIN;Acc:ZDB-GENE-041114-19]
Coordinates
chr9:3560993-3563495:+
Coord C1 exon
chr9:3560993-3561058
Coord A exon
chr9:3561059-3563206
Coord C2 exon
chr9:3563207-3563495
Length
2148 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAATCCTGATCTGTCCACAGACG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GTCAGTGTTTGTCTGAAAACTTCTATTCTCGACAGGATGGCACCTGTGTGTATTTCTTTACTAAAG
Seq A exon
GTAAAAACATTTCAGCAGATTTCAGACATTTTTAAATCGAAACTCCATGACACCATATACTCATGCATTCTTGATTGTTGGTGGTTTTCTCTGCTGGGAAGAGGGAAATTTTTTTTATTTTTACTGTTGATCATCAGTTGGCACCAGAACTGTGCAGAAACAGGTTTCTGGGTTTTATATGGAGTTCTATGAAGTAAAACAGTGTGGGAATATAAATTTATACTATCTGTATATAACTGAAAAGTTGTTTTTAGAGTGTGACAGACCTTAAAATGTCTTGGTTTCCTGAGCCCTGACGGTCTCCAAAGTAATGCAAATTGTCAGTTTTACAGCACGGCTGTGTCTATCGTTTTCTCCAGTCGGTCAACTGATCGTCCGGTTTCTGTCTCCAGAACATCATTTGCACACTGTTTTAATGTTAAATGTATGGTGAATGGGTACTTATATGCTGATGAGATCAGGCCTGCAAAGGCATGTTACCCTGCCGACAACAACACTATTTGCATGCTTTGTTTAAGGGTGCTTTCACACCTGCCTTATTTAGTTCGATTGAATCGCACTAGAGTTCGTTTCCCCTTTTGGTGCGGTTCGTTTGGGCAGGTGAGAATGCAGCAATCGTACTCGAGTGCGCACCAAAAGCGGACCAAATAAGCATACCGAGACCTGCTTGAAGAGATGGTCTCGGTACGCTTTCAAATGAACCCTGGAGCGGTTCGTTTGTGGTGAGAATATGATCCGTACTAAAACAGGTCCAACAGGAAAAAGTACTGCGCGTTTTGGACTAATTCAGCTGCCGTAGGCCGATGCGCTGTGCATTATGGGATATGGAGGAAAAATATTTGTTGACAGCGATTTACCAACAGAGAGAGAGAGAGGGGAAACATTACCTGATGGATCGTTGGTAATATTTCCGCAAAATGACCATGTCGCAGTTTAGCTAAATTAATTCACAGCTCCTCCTGAAGTGACGAGTGATGCATTAAACACTGTTTTCCAGCCGCGGCCGCACTTCATTTTCGTAATGTATAGTTTGTCTAAAGCAGGGATACAGTCAGCCAGCGCAGTCGTCCCTCCAGAGTAAAAGGTTTTGTTTACCTGCGGGTGTTCACTGGCATTTTCCCGCACGTGAAATCTGACCAATCGATAAGCAGTTTAGGAACTATGTTTAACAACATCTGGCCAATGAGAGATGTGGATTTTGTCACATGACTGGATTTTTGTTCTTTTCAACTGGTTCGGACCAAAGCCAGCAGTGTGGTGTGAAAATGACCCAAGGCCGGCAGAAAATGCAACAGTGTATCATTTATTGCGCTGGGTCCGGACCAAATAAAGCGAACTACAGATGTGAAAGCACCCTTAGACTGTCCCCACCTACATGTATCAAATGTATTTATGTAAGTGTCTGTTGTACCAATTGAGAGTTTCTTTCGATGACGCCACAGCGACGCCGAGTTCTTCTTATTAAAAGGATTCTGCTTTGAAGATACCAAAAGTTTTCCCTGTTTTTTTTTTTTGGGCTCGTCTTAGAATTTCACAACAGTTTGGTGCCGCGAGCCAGACTAGAGAAATTCACAACAACAGCAAATTATAGTATGCATGCATAAATACAATGACTATGGTTACTATGTTCTGAGAGCTGAGCTGCGTATTTAGATTTTCCCAGGCAAATCAAGGTAAATTTGCAAAGGTGTCTCTCACACACTGTACTCTCTATATAGCTCCATATAAAGCCAGAAACTAAGCTTTTTTTTTGCACTGCAACTGATGATCAGTAGCATACATTTTAAAATGTACCTCTTCAGAGCAAACCAGCAACAATAAAAAATGTATATTAATATTGTATCATTTCTTTGCAATACAAACATGCAATTCCAATGGAAGTCAATGGGGCAAAAAAAGCCACCAACATAATGAAAGGGTAGTCAATTTGCCCAGAGTGTATTGTTGAGTTTTCTAAAGCAGTTTCCCAAAATGTGTGTCAAAAATCAATTTGCTGAAACACAGAGAAAGTTGTGGCCAAATTAAGACTCATAATCCCTCCAGAGTGCATGAAAACATCCCCAACAGCACACAAGGGTCGAAAATCTTAATACAGAACCATTTGAGTCTGGCATAAACACTTACTTGTAAATCCTGATCTGTCCACAG
Seq C2 exon
ACGAGGTTCATGGTCTGTTTTCTGCTGCTGGATTGGAGGAGCTTCAGAATCTGGAGGACAGGAGGCTGCAGGTGAACAGAGGGAAGAAGATACTGATGCACAGAGTGTGGATGCAGAGCAAATACCGCAAACCAGAGAAATGATGAACAATTAAACGAACTCTTTTTAGACTGAGAAGCAGGGATGGACAGTATTTCTAATAGTATTTTATCATTTGTATTTGGGCTTGTAGTTTTAAAATACTTGGTAAGAAGTCTACATGATGGTGTCATAAAATTGAGGCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017359:ENSDART00000008606:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(9.4=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(6.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]