GgaINT1017783 @ galGal4
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2342382-2344617:+
Coord C1 exon
chr27:2342382-2342447
Coord A exon
chr27:2342448-2344138
Coord C2 exon
chr27:2344139-2344617
Length
1691 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTTCTTCTTTCTGCTTCCAGATG
3' ss Score
11.84
Exon sequences
Seq C1 exon
GTCAGTGTCTGTCTGCTAACTTCTATGTGAGAGGTGATGGCACCAGAGTCTACTTCTTCACCCAAG
Seq A exon
GTAGGAGGCTGGAAAACGCATCCTCACCTCTTTTTGTCCCTGTGCACCCAAGTTTTGTCACTAGCTCTTTCCAGCCAGTCTTTCTTGGAGCAGTGTGAAATGTGAAGTGTCTCCCAGTCACACATGGACCTCAGCCTGTCAGTTGCTTGTGTGGATACGCACAGTAAATTCCTTTGTGGAAGATCTTTTAGGATTAAGACTAGAGTGTGTGCTACACTGAGAGGAATGGAAGTGGAGAAGCTCTCTTGAATCTTGTTGCTTGTGGAATGTGCAGTCAGATGAACACGACTGGATGGAACTTTACTGTTCTCACACAGTGGAATGTGAGGAGCGTAGTTCATTATAGAGCTGGGGCGGGCTCCTTAGTTCCTTCCAGTATTTAAAAGGGGATTACAGACAGGAGGGGAATCAACTTTTTACTCAGGTAGATAGTGATAGGACAAGGGGAAATGATTTTAAGCTCAAGAAGGGAAGGTTTAGATTGAATATCAGGGGAAAGATCGTCACAGAGAAAGTGGTGAGATGCTGTAACAGCTGCCCAGGGGGGCTGTGGATGCCCCATCCCTGGAGGTGTCCAAGATTGGGTTGGGTGGAGCCCTGGGCAGCCTGGTCTAGTCCCGTATCTGGAGGTTGGTAGCCCTGCCTGTGGCAGGGGGGTTGGAGCTTGATGATTCTTTGCATCCATTCCAACCCAAGCCATTCTATGATTCAGTTGCTGCTTTGTGTTCGGCAGGAGTTGAATTTCTCTCTCCTTATCACCAGTCACACCCCCAGTCACTTCCACTGAGGGCCCATCTGCATAGTCTTGTTTTAGAGTACCGGCACAACTGCAGTGAACTGTTCTGTTCCCCACTGCACAAGTCTCGTTTGTCACAACAAAATTAATACTCAGTGCATGTTTGGCAAATGCTTCCCTGTGTCAAGCATCTGATAAAAGAGCACAAGCTGGGACCTGCTAGCTCTTTTCTCCAGGAGCTCCATACCAGTCACATGCTCCCAAGCTGCAGTTGAATGAACTCTCTGCTGCTCAGCAGGACTCAGACTGATTTTGCCCACGGCCACTGTGCTGGGGCACTATGATACTTATTTGCTTGGACAGGAATACTTAGCAATTTAGGTGTTGCAGCCTTGAGGGCCCTTAATGCTTTGATTGGGCCCCAGCTGGGTGTGTTTTTTTCAGGATTTTTTTTTCCAAACATAACCATAATGAATCCAGTTCCCCTCCAGCCCATACAGCAAAGATGTTATTGCCACCATTTTAAAAGCGTAGGTCTGATATCTGATCTGGTTCTTTGCTCTTGCAGACTCTGAAATCTCAATGGAGAGAGGGGGGAGGGGTAAGGAAGGGATCTGTTCCTACTCACTAGAAGGTGATCCTTCAATTGGTTACTAGAGGCAATACCAATGTCTGGAACTGTTATTGTTTTGTCAACTCTCTGTAACTCCAGTTGTCCTCACAGTACTTCTTTCCTTCCTTTGTAGAAGGTAAATTCAAAGGAAACTTATGAGACTGTAGTCTTATTTCCCCCATAACATAGTAGTTAAGTCCTGTCTGATCTTTACATTTCCCTGCCAGACAGAGACCATGAGTTTCCTCTGGCCCATCTTTCAACCCTGTTTAGCCCTCAGCGTGAACAGATATCAGTTAAATGAAAGCTGTAGCATCCTTCTCTTCTTCTTTCTGCTTCCAG
Seq C2 exon
ATGAATTAGATGATCTCTTCACAAGAGCTGGCCTGCAGAAAATACAGAATCTGGTTGATCGTCGACTGCAAGTGAACCGTGGGAAGCAAATGACAATGTATCGAGTATGGATCCAGTGCAAATACCAAAAGCCTGCTGGCCCTCAGCTGTGAGGAAGCAGGGCATGCTCTGTCAGATTTTATCCTCTTCGTGGCCATGTGCAGTCTCCTCCTGGTGAGATGTATTGTTGGGGAAGTCAGTGTGCACAGAACCTCAGTGCCTTTTATAGTGCCTAGCATCACTTCAAATGAGTTTTGCTAAGGACAAATGGTCTAGGAGGAGACCAACCACTGTTTAAGGTGTCTTGCTACTGGGCTGGGTTTTTAAAGTTTATAGTTTTTAACAACATAAGAAGTAGTCATGCTAAGAGCTCAACCAAGTTGAGTAGCAAGCCTTTCTTACTGTGGATTTCTACATGAAACAAGATCTTCAACCTCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.5=100),PF118993=DUF3419=FE(24.7=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(8.4=31.4),PF118993=DUF3419=PD(3.4=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTCTACTTCTTCACCCA
R:
AACAGTGGTTGGTCTCCTCCT
Band lengths:
358-2049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]