MmuINT0098036 @ mm9
Intron Retention
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104999033-105002460:+
Coord C1 exon
chr11:104999033-104999098
Coord A exon
chr11:104999099-105000874
Coord C2 exon
chr11:105000875-105002460
Length
1776 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
GCTGGCTCTTTTCACACCAGGTG
3' ss Score
8.18
Exon sequences
Seq C1 exon
GTCAGTGTCTATCTGGAAACTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
Seq A exon
GTATGAAAATGGTGATGTATTAGTGCTAAAGGCAGTGTCTACAGGTCAGGTAAATAGTTACCTGCCCTTAAGTCACCTGTCCCTCCAGCCTTTCTCCTCTCATACTGCCCTGAGCTGTCACTTGAGACAACTCTGGCTCATGCTTGTTGTAAATGATATTTGATAACTGTATAAGCTCTTAATATGAACCGTCACTCCCCACCCCACCCCCAGTTAATCAAGACATAGTCCTATGGATTTATTTAATCAGATTAGACAATTCATAATTACTGGACAGTTGCCCCAATCTGTTTTTCTATATGCCAGACTGGCTCATTTGCAGCTAGCCTCCCTAGGTTACTTGTTTGGAGCCTTGGCTGCCATTGTTCCATCAGCCTGTCTTCTGGATGCACTTCTGTCCGCATGATCGTGGTCCATCTCCTCTCTACTCCTCCTCTTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTCCTCTCTCTCCCTGCCCCCACCCCATCCCCCAGTTCTTGTCCCTGAACCTGCCTCTGTCTCTGTCTCTCTGCCACACTACCTGAAACCACCCAGCCCTGTAGTTGAAGGCCTTCCTACCTCTGTTCTCCCCAGTAATTGGCTGTAGCCACTTTTGTTTAACCAATAGCTTTAAATTGGAGAGCGGGGGGGGGGGGGGGGGGCGGGTGAGGGTGAGGGTGTATGTATACAATGTCATTTGGTGTACGTGAGGATGTGCTCTGCTCTAAATCAGCTGCTTTTCCTCTCACTTCTGTCTCTTTGTCCAAAGTGGGAACTTGCCCTTTTGGCAAGTCTCAGCCTCCAGCCTCGTCTGATTTGCCCTTTGCAGCAGCCTGTGCTTCAGGTGCAGCTGTGTCCAGGTGAGGCGCGACCTGGACCATCTCTGCCATCAGCCCTGTCCACAGGCTCCTTCCACCAGTGCTTTAAGAGAACTGGTGGGCCCTTTATTGAGTCATATACTTAAGACGTTGTCTATGTAGCATTGAAAGTTGTCCTGTGGGCTGGTGAGATGGCTCATCAGTTAAGAGCACCGATTGCTCTCCCGAAGGTTCTGAGTTCAAATCCCATCAACCACATGGTGGCTCACAACCACCTGTAATAAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGACAGCTACAGTGTACTTACAGATAATAAATAAATAAATCTTAAAAAAAAAAAACAAAGAAAGTTGTCCTGTAAGACATTGTGTTGACATACTCATCTGTCGGCTTGGGAGAATAGTTTTTGGTTTGGGAATTATTGCTTTGTTTGAAGCCAAGTCTCTCTGTGTAGCCCAAGCCAGCCATGAACCCTATCCCTATCCTGCTATCCCTTGCCAACTGCTAGTGTTATATATAGGCTTCCCTTCACCCTTATTGTGTCGTTTGTTTGTTTGTTTGTTTGTTTGTTTGATTGATTGATTGATTGATTGATTGATTGATTTTGGGGGTGGTATGTGAATTTCTATCTTCTGGTTTTTTGGTTGGTTGGTAGGTTTGTTTTGATATTTTGGTGCCCAAACCTGGACCTGTCATTGTCAAACTGTCACTACATCAGTATTCAATGCTAATAGGCCTCTTAAAAAGCACAGTGACTTAGGAGGCAGAGGCAGGTGGATTTCTGAATTTGAGGCTACCACAGAGAAACCCTGTCTCGAAAAAAAAAAAAGGCACAGTGTCGAGGCTCCACTTCACATGGAGAGTCGCTAGCAGAGCACCCTCTCTCCAGAGCAGCCTCTGTAACGCTGGCTCTTTTCACACCAG
Seq C2 exon
GTGAGCTGGATACGCTCTTCACCGCTGCTGGCCTGGAGAAGGTGCAGAACCTGGTGGATCGCCGCTTGCAGGTGAATCGAGGGAAACAGCTGACCATGTACCGCGTCTGGATTCAGTGCAAATACAGCAAGCCTCTAGCACTCCGCTCCAGCCAACATGTGCCCATTCCCCACGCCACAGAAAGTTCTTCACATTCGGGGCTTTTGTAAGAAGACATCTGTAGACAGCGGCTTGTTGATGATGGACAGTCTGGGGATTCAAGGAGCTCTAACTTTGAGCCTAAGAACAACTACTTTCCGGTTTTTAGCCAGGTGCAATGACACATGCCTTTAAACCCAGCACTCAGGAGGCAGAGGCAGACAGATCTCTGAGTTTGATGACAGCCAGTGATACACAGAGAAATCCTGTCTCCAAAAGCAAACCAAAAAAGTGTGGTTTTATTTCTAAAGCCCATTAATGCGTATTTTCTGGAGTTCGTTTTATTAATATCATTGGTCGAGGCAATGCCCTGGTGAATGTGGGGAGTTCAAAGGGCAACTTGCAGGAGTCAGTTCTCTCCTACAGGCTGGTCCTAGAATTCAGACTCAGGCTTGACAGCAAACACCTTGAGCTTTTTGACTGCCCTCAAATTTTTTAATGACTAGAGTTTTATATAAAACTCATTCTGTGACCAAAAATGACCTTGAAGTTTAGATCCTCTTGCCATCATATTGCAAGATGATGATGGTCCACACCTTTAATCCTAGCACTCAGAAGCCAGAGACAGGCGATCTCTGAGTTCAGGGCCTGCCTAGTCTACAGAGTGAGTTCCAGGACACCCAGGGCTACACAGACAAAAAAAGAAAAATAAGAAAGGAAAAAGAATGCTAACACATTTGAGAGTTAAGAATTTAAAATCCAAGCCTGGCCAAGTGTGGTGGCTCACAGCAGAAATCCCTGCGGGTAAAAAGCTGAGTTAGGCCGGGCGTGGTAGCGCACGCCTTTGATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAGGCTGAGTCAGCACAGGGATCCCGTTAAGATCAAGGCTAGCCTGGACTGCACTGTAAAACCATCTCACAGATGGTGAATATGGCTCAGTGGCATGAGCCCTGGAGCCAGCCAGGTACGGGGTGTTAGCTTAATCTAAATTGGCATGGGGGGTCTGAGATAGGAGAACTGCCTTCAATTCCAGGCCAGCCCAAGCTACATGGTGAAAGCCTGCCTGGCTTGTTTGATCCTGGGGCAGGATGGAGGTGATGCTGTGCTCCGCTGCAAGGTGCTGGATTATGAGGGCCTTTTACTGTCTCCAGTATTAGCACTAGAACGAAGGCTCAGCAGGTTTAGGCACTTGCTGCCGAGCGTGACAGCCTGAATTCATGTCCCCAAAACCCACATGGTGGAAGGAGAGAGCCATCATGTGCTGTAGCATGTCTGTGTCCTCAGACATACGTACCAAAATAAAATAATTTTCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-Mettl2:NM_172567:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(11.8=100)
A:
NA
C2:
PF134891=Methyltransf_23=PD(8.6=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCAGAGTTTACTTCTTCACA
R:
AAGGCATGTGTCATTGCACCT
Band lengths:
358-2134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: