GgaINT0143095 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1349469-1350516:+
Coord C1 exon
chr27:1349469-1349570
Coord A exon
chr27:1349571-1350417
Coord C2 exon
chr27:1350418-1350516
Length
847 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTCCCTGTGCCTCTCCCCAGAAA
3' ss Score
11.14
Exon sequences
Seq C1 exon
GAGGCCTATGAGTCAGCCGTGGAATACTTCGGGGAGAACCCCAAGACCAGTCCCCCCACTACTTTCTTCCCCATGTTCATGCGCTTCATCAGAGCCTACAAG
Seq A exon
GTAGGAGGGGATGGGGGTGTCCTGTTCCTGGGGGTTGGGAAGGAACGAAGCCACGAGTGAAGGTGGGGGCTCACCGGACCCTACCACTCGGAGCCGTCCGTTGGGGCAGCTGCAAATCGCAGCTCCCTGCTGGCACGGAGCAGGGCTGTTGGGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTGGGGCAGCTGCAGATCGCAGCTCCCTGCAGGCACCGGGCTGGGCTGTTGGGGACCACCTTTCGAGAGGGAGGAGAGCACTGCACTCCCCCAGCCCTGCAGCAGCCCCCAGCTCAGCAGGCCCTCCCTGTGCCTCTCCCCAG
Seq C2 exon
AAAGCAGAGCAGGACATCGAGCTGTGGAAGAAACAAGAGGCTGCGGCCAAGGAGGCAGAGTCCAGCCAACCTGGCAGTGGGGAGCAGCTTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.3=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATGAGTCAGCCGTGGAA
R:
CTTCAGGTCAAGCTGCTCCC
Band lengths:
198-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]