DreINT0069098 @ danRer10
Intron Retention
Gene
ENSDARG00000075041 | fmnl2b
Description
formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
Coordinates
chr6:13167063-13167347:-
Coord C1 exon
chr6:13167246-13167347
Coord A exon
chr6:13167165-13167245
Coord C2 exon
chr6:13167063-13167164
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGTGCGATTGTTGTTTTTAGCAA
3' ss Score
7.01
Exon sequences
Seq C1 exon
GATGCCTTTGACGAAGCTGTTAAGTTTTTCGGGGAGAGCGCCAAGACCATGCCACCCTCTGTGTTCTTCCCTGTGTTTGTTCGCTTTATCAAGTCCTATAGG
Seq A exon
GTGAGTCTGGGAAACACCAGTATTCAAGACTTTCTAGTTTATACAGGGACAAGGTCTAATATGTGCGATTGTTGTTTTTAG
Seq C2 exon
CAAGCGGATGAAGAGAATGAGCTGAGGAAGAGGCAGGAGCAGCTGATGATGGAGAAGCTTATGGAACAGGAGGCCATGATGGAGGAGCAAGAAAGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075041:ENSDART00000151566:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(38.4=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTTTTTCGGGGAGAGCGC
R:
TTCTTGCTCCTCCATCATGGC
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]