BtaINT0063177 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43657493-43660117:-
Coord C1 exon
chr2:43660016-43660117
Coord A exon
chr2:43657592-43660015
Coord C2 exon
chr2:43657493-43657591
Length
2424 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTTATTTTGATTTCACCCAGCAA
3' ss Score
4.42
Exon sequences
Seq C1 exon
GATGCCTTTGATGATGTGGTGAAGTATTTTGGAGAAAACCCCAAGACAACACCCCCATCGGTCTTCTTCCCCGTCTTTGTCCGGTTTGTGAAAGCCTATAAG
Seq A exon
GTAAACAAGTGTCTGTCAAGCCTCCCCTGGTGTTATTTCTTGAGCGGGTGCCTTCCTGGAGTTGCACTGCAGTCTCGAGAGCTCTGCAGGGGCCTCCCCTAGGCCTTCAGGCGGCAGATCTGGGTCGGGAGGACGAGACGCGGTTTCTGGCCCTGCTGCTTAGGCCCTCAGACTGTCATGCTCTCTGTTTCTACCTCCCCAGCCAGGGGCTCAGCCCCCAGACAAAAGCCTTTGGCTATCCCATGGGGCGAGGGAGACCCAGGACCATCCAAAGCCATCTTTGGAAGCTGCCGCGTCAGCTGTCACCCGTGCAGGCAGGTCAAAGGACTGAGAAACCCAGGCCTGCTGTGGAGTTGTGGAGCAAGTCGGGAGTGAGCCTCGGCATCATAGCCGAGGTCAGGGACAGCATGTTCATGCTGGGCCCGCCCACAACCACGGGCCTCTGGACCAGCACTTCCCTAAGTGTGGGCTGAAAGTGGCTCTTGGAAGAATAGTCGCTCCCTGTTTCCTTATCTGGACCCATAATGGCCCTTCCTTTAAATGGGAGGCCCTCTGTGACATACCCTGGGACCCATATACCCTGAGACCATGGTTTTGAAAAAGTGCATGATTCAGATCTGTGTCAGAAAAATGTGTCCAATGAGAAAGGAAGCCAAGGAGAGCATTATGAGATTTCAGTGCTCAGCTTTCCAGATGGAGCAATGGTAAAGAAGCGACCTGCCAATGCAGGAGGTACAGGAGACGCAGGTTAGATCCCTGGGCAGAGAAGATCCCCTGGAGCAGAAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCTCATGGACAGAGGAACCTAGTGGGCTACAGCCCATGGAGTCGCAAAGGGTCAGACATGACTGAGCACTCACGTGAGTGCTCAAGAAGGCAGTGCAGTCTCTACTCTCCAGGCTCGCCTCATGTTCACCTGGGAGATGTTGGTGGAGGAAGGAGGAGCGTGACAGTGGAGTGGGGAGGGATGCAACAGAGGTGTGGACATTTCCAGAAAATGTGATTGGAAACAGTGAGTCACTTCACCGTCCTGATGGCTTTGGAGAACCATCCCTGGGCCTTTTCACTGGAACCCACGAGGTTCCCACTATTCAGCCCTCTTCTCTCAGCATGGCTCAGTGTAGTGGTGATACGACCAGCAGAAGGAAGGCACCCCCTTGCATATGTGAGGGTGAGCACAGGCACAGCACCAGGTCCATGTGCGTGATCCCAGGGGCTGTGGGCAGTGAGAAGTGCTGGGCACTGGGCCTGCTGACCGAGGTGCTCTGCAGCTCCCTGGCTCAGGTGCAGAGATGGCTTGAGCCAGCTCTGGTTATGAGCTGGGACCATGTTTCTTCACATGAAAAATTGTAAGTCTAAGGTCTAAAGAGAAACTATATGCTGTTTACAAATGTATAATACAAGCTGGGAAGAGGCCCTGGTTGGTCTCCAAGTCTGGAGGAAAAGAAGAGGTGCCACTCTTGGTGGTCTGTGGGGTGTCACAGGTCAGAGCTTCTTAGCACATTCCTTCCATGTTATCCTTTCTCCCCGAGGTCCTGTTCTCTGGCTCCGTGAGGCACTTGTCAGGCAGGGATGCGATCAGATGTTCTACTTGCCCTAACACACTACATAGATAATAACTGCCTGGCCTGACACTGACCGAGGGACTTGGTGGGCAGATGTTAGGATTTTAGGATGTTTTCTCTTCCTAAGTGTGAACCGAAGTGAAACTTGAGACAAAAGCAACAAAGATGAAAATGTAAAGTTTATTACTGATAAAAGCTGGTTTGGAGGTTAGGGTATGCCTTTGTGAGCTTATACTTCAGCCCTGATTTAGATTTATCACTGCACAGCTAGACTATTAGAAGTAGCTGAGGGAGGCTGGATTCCAAAGAGAGGATGCTCAGAGGGTTGACCTGAGGTCGACCTGTTAGATTTCTTGTCCCTAATCTGTCAGCCTTGCCGCTGCCTCCCTCGGAAAGGAGTGAGGAGGGAGTCCAAGAGTGTCACTCGGTGAGGCCCCCTCAGGAAACAGGAGGCCAGGGGTGGAGGTTTTTCCCTAAGAATGGGCAGAAGGAGAGGAATCTGAGACCTTCCTTTCAGAGAATCTGTAGGGAGGGGAAATCCCCACACAACGTGAGAAAGACTAGGAAGCGGCTTGAGTAGGGAGAGGACCATCAGGAAAGGAATTTTCTGAAAAAGGTGAATCTCAACTAAGAGTTTTGAAGAGCTGTGATATAGACTGACAGCAAAACCCCAGAGTCATATGTAGGAATAAAGTGTAGAGCTTTTAAACCTTCCCTTCACTCTAATTCCTGGCTAACTAAGGAGCCTCTCACAAGGGCTTTTTAAAAATCTTGACTGCTGGCGTTTCCAGCAACATAATCTTCTGCTTATTTTGATTTCACCCAG
Seq C2 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCGCTCATGGAGAAACTCCTGGAGCAGGAAGCTCTGCTGGAGCAGCAGGACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.553
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]