HsaINT0065137 @ hg38
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152637573-152640056:+
Coord C1 exon
chr2:152637573-152637674
Coord A exon
chr2:152637675-152639957
Coord C2 exon
chr2:152639958-152640056
Length
2283 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
GGTTCTTTTGATTTACCCAGCAA
3' ss Score
3.18
Exon sequences
Seq C1 exon
GATGCCTTTGATGATGTTGTGAAGTATTTTGGAGAAAACCCCAAGACAACACCACCCTCTGTCTTCTTTCCTGTCTTTGTCCGGTTTGTGAAAGCATATAAG
Seq A exon
GTATATGTTAAGGCCCTCCTTGCCCTTATTTCTCAAGCAATTGCCCTCCTTGAGATGTGTCTGAGTCCCAACTCTCTGCAGAGGCCTCCCAGTTCCTGTGGACAGCAGATCTGGGTGGCATTCACGAGATAGCAGTCCCTAGCTCTGTGGAGGCTGAGGGACATTATGGTCCCTTTCTCCACCTAGCCAGTCCTCTGCCTCAGCCAGAAAACAAAGCTCTTGGCAGCCCCCTTGGGGCAAGGGAGATGCTCAAAGACATTGCTGCCCCATTGACTGTTCACCTAGGCAGGCAAGGTGAAGTACTTGAAAATCCAGGCCTCTTGTGGAATTCTTTAATGGGTAGAAGTGAGCTGTGGGCTGTGGTGAAGGTGCATGATACAGCTGAAGTTAAGGAGAGCCTGCTTGTGTAAGTCATAGCACAGGGCTTAGGACCTCTTAGACCAGCATTTCTCTAGTATGGACTAAAGGATGGTGCTTTTAAGGATGGGCACTCTCTGTTTCTTTGTGTGGATCAGTAAGTGGCCCTTCCTTTAAATGGGAGGCCCTCTTGGACATAATCCAGGGCTGTGGTCTTGAAAAAGCCTATGACGCAAAGAGACATGTATCAGAAGGATTTGTCCATTTGAGAAATTACAAGAAGGCTGTTAGAAGATTTTAGCTGACCTTGGCAACACCTCAATCTATATCCTCCAGGCGTATCTTCATGTAGCACTGATAACACTGGTGGAGGTAGGAGGAATGTTTATTGCAGAGGGGAGGAGGGATGTGGCAGGGTTCTCCACACTTTTGAGAAGTCCTGTTGGAAATAGGGGGACACTTCCCTAACACCACTAGGGGCTGAAGGCTCTGGAAAATCATTATTGGGCCTTTTACTAAAACTCAGAAAGTCAAAATATTCTTAGCCCATCTTCCCTCAGCATGGCTTAATGTAGCAGTAGAGCTATAAGCTGCTGGTAGAAGGAACGTCTGTGGCAGTCAGGGTGAACAGAAACACAGCACAAACTCCGTGTGCCAGACTCAGGATTTGCTCGTGATGAGAAGGCTGCGGGCCACCAACTGCTGCCGTCTGCAGTGCTTGGTAGCCCAAGCCCACTGGCTGGCTGTGTTTATGTGCTGTAGAGATAGTCTGCGATGGCCCTTGTCATGTGCTGTGCCATTTTTTTCACATAAAAACATGTAAGTCTAAGGTCAAAAGAGAAAATATATTTTAAAATCGGCTAAGACAGGTTGGGAAGTGGCTGGGGTTTGTCTCAAAGCCTGAGGCATCAGCAGGGATATGCGTGGAGCAGAGGAAAAAAGAAGCTGCCCTTGGTGGTCTGGGCTGTGTTGGAGGTCCCAGCCTGTCCATCAGCGTGCTCCTTCCACCTCACTGTTCCTCCCTGTGATTTTTCACAGCTGATTCAGTGAAGCATGTGCCAGGCAGTGATGTGACTGCCAGGATGTTTTTCTTGCCCTATACGTGATGAATAGCCTCCTAGCCTGGCACTCACCTAGGGACTTTGTAGGCAGAGGTTGGGGTTTTAGGACATCATCCCTCTCATATAGACCAAAATGAAAACAAAAGCAATGGAGACCCAAATGTAAACTTTATTACTGATAACAGCTGGGCTGGAGGATGTGGTGTCTGTGACCTTCTGCTTCAGCTGCAAATTAGGTAGATGACCTGTCCATCAGTTCACAGCTTGACAACTAGAGGTCTCTTCGGGGAGGCCGGCTTCAAAAGAAAGAGTGCCCAAGAGGGCTGAGCTGAGGTGAGCCTATTCACTTTCTTCTAGATTCATCAGACTAGTCACACTGCCTTCCTTGGGAAGGAGCAAGGCATGGGAGAGTCCAAGAGTGTCACTCTGGTGAGGCCCCGAAAAGAAATGAGGGTTTTCCCCTAACAATAGGCAGAAGGCAGAAGAATCTTAGATCCTGCTATCAGAGGAACTCTAGGTAGGCAGACTGTCTCTGAAAGGAAAACAAAATCACTGAGCACAGCTGCCAGGATGGTAGGTGCCCACCAGTGTGTGGGACAGAGACTAAGAGAAAGTTCAAACAGGGAGCGATCATCAGGAAAGGACTTCTGGATGAATTGAATCTCAGCTCCCAGCTTTTAAAGAGATGTGACAGGTAGCGAAGCCCAGAAGCAGAGCTAAATACAGGCATAAAGTGTAGATCTTCTCAACCTTCCATTTATTGTAATTCTCAACTCACTAAGGATGCTTGAAGAATGACTTTAAAAAATCTTGGCTGCTCTCATTTCCATTAACATCATCTTTCTGGTTCTTTTGATTTACCCAG
Seq C2 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTCATGGAAAAACTCCTAGAGCAAGAAGCTCTGATGGAGCAGCAGGATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827:ENST00000288670:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.697
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development