GgaINT0047764 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37168376-37169064:+
Coord C1 exon
chr7:37168376-37168477
Coord A exon
chr7:37168478-37168965
Coord C2 exon
chr7:37168966-37169064
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTGTGTGTGTGATAAATAGCAA
3' ss Score
4.69
Exon sequences
Seq C1 exon
GATGCCTTTGATGATGCTGTGAAGTATTTTGGGGAGAATCCGAAGACAACACCCCCCTCAGTTTTCTTCCCAGTGTTTGTCCGATTTGTGAAGGCCTATAAG
Seq A exon
GTAAGCAGGAGCATCCTCCCTTTCTCTTCTGTCGTTCTCAGCGTTGTTTGCCATCTGCTGTCTCAAGGTTCCCAACAGCACAGCTTGTAGCTCCCCCTAGCTTCGATTCAATGTGAACACAGCAGCACCAGCCCAGGGCTGCACAAATAGTTGGTTTGGGATTATTTTCAGGGCTGAAAGGCAGCACAGGTGTCTGAAACGTCAGAGGAGTCCTCAGAAACGGAATGTCTGTGAGGTTAAAGTTCTCACCTTCAACCCTGACTGTGTCCTTTGGGATCAGGGTGGGGGGCTCTGTGTGACCTGGGAGGTCTCTCCCAGCTCACTCATTTCAGACTTTGTTTAGCTGAATTGCTGCACTCTCAGTTTGCCTCCTTGGAAGGTCCTGTGGTAGCAAATACCAGTCTAGTTCATTTGTAACATTCAGTTTCCTTGTAGTGATTTGAAGCTGTAACTTGTTGGGTCTTTTTGTGTGTGTGTGTGATAAATAG
Seq C2 exon
CAAGCAGAAGAAGAGAACGAGTTGAGAAAAAAGCAGGAACAGGCCTTAATGGAAAAACTTATGGAACAGGAAGCGATGATGGAGCAGCAGGACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.842
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTGATGATGCTGTGAAGT
R:
CTTTTGGTCCTGCTGCTCCAT
Band lengths:
199-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]