MmuINT0065119 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52982506-52985145:+
Coord C1 exon
chr2:52982506-52982607
Coord A exon
chr2:52982608-52985046
Coord C2 exon
chr2:52985047-52985145
Length
2439 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTTAAAATTGTATTTCCCAGCAA
3' ss Score
5.33
Exon sequences
Seq C1 exon
GATGCCTTTGATGATGTGGTGAAATATTTTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTCCCTGTCTTTGTTCGATTTGTGAAAGCCTACAAG
Seq A exon
GTTAGTACGAGGACACCCTTTAGCCTTCTTCTCTGTTTCCTGTAGGTGACCCCCCCGCCCCCCAGAGGTATTTGTGACCTAACTCCTGTGCAGCAAGCGCTCTTTGGCCTTGGGCAGATCTGGGTGCTCACTCTCTTCCCCTGCTAAGGCTGAGAGCATTTAGGCCTCTCAGGCCTTGATGGTTCTCTATCCCATGGAGCCTTCAGTAAGAAACCCATGCAACCAGCTCTCTGCTTGGGGCAGGGAGGGGCTCTATTACCACTGTTGTCCTGTCCTTGGTGACCTACACAAGCAAGGTGATGGGCTTAAGACGTGACTGAGCTGTGAGACTTCCTAGACTTAACATTTGGTGTTATGGAATGAAGGATGGCGCTATATAAGACAACTGCTTTCTCCTTCTTTTCTTCTTCTCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTCTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCTCTTCTCTCCTCTTCTCTTTTCTTTTCTCTCTCTCTCTTTTTTTCTCCCTGAAACAGGGTTTCTCTGTGTAGACCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTTTGCCTCCTAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCAGCTCTCCTTTTCAATCTGGACCCATCCTGAGAACTGATCCATGATGTTGAAAAAGCATATGAATGAAAGAAAGAATGATAAGGAAGACTTTTAGAAACTCTTAGCACCTAGGAGGCATTGTGATTTTTTAGTACCAGTGGGGTTTGGTTTCAGAGGTTTGGTGATATGATTCTGAAGCTATTCAGTTCCCTCACATGAAATGATGCGATGCTTCCTTATATAGAACTTGCACGTCTTCTTGTATATTTTAAGTCTCTAGATTGCTTGCAACACATATACCAATTGTACTGGTTGGTTTCTTTTCTATTGCTGTGATTAAAAACACCATGACCAAGGCAGCTTACCAAAAGTAAGAGTTTACTCTCTAGAGTTCATTATGGTGGGTAATCGTCTATCAAAACCTCAAGGTCCAGTGACACACCTCCTTCAACAAGGTCACATCTCCTAATCTTGTGTTGGTTTGAATAAGACTGGCTTTCATAGGCTCATATATTCGCATGCTTGGTCACTAGTTGAGGAGCTATCAGCAAAGAATTAGGAGGTGGAGTCTTGTCGGAGGAGGTGTGTCACTGGGAATGGGCTCTGAGGTTTCAAAAGCCCACACTAGACTCAGTCTGTCTGTGTCTCTCTGCCTGTGGATCAAGATATAAAGGTCTCAGGTAGTGCTATGATGTTTGTCTGTCACCATGCTCCTCACCATAGGTAAACTGGACTAAGCCTCTGAACTGTAAGCAAGCCTCCAATCAAATGCTTCCTTTTATAAGAGTTGCTTTGGTCAAGGTGTCTCTTCTCAGCAATAGAAAAGTGACTAAGATCCTTCCCAAACAGTTCCACTAACTAGGGAATGAGTATTAAGAAATAGAAGCCTATGGGGTATGGAATCATTTAATTTACTGTTCATATTATGCAAATAGTTGTAATTTATAATTATGGGGAGTTAAGTGATAATTGAGAAATTAATACAGTTTTACCCTCCTAGGAGCCAAAAGGAAACATAACAAAAGCAGCAGACACATGTACACACATATAAAATAGTCAGCAAATAAGATGGTTTTAAAAGAGAGAGGTTGACATCTAAATACAAACCTCATTGACAGACTCAAGCTTATAAATTATTCTCAATCCCCTAAAGCCAGACAGAGAACTTTTCCATCAGTTTGTAGCTCAACAGAAGTCTGTTGGGCAGGCATGACTTCAAGAGAGGACCCAAGAGAGCTACGTCCATTCTCTTTCTTATGCCAAGTTGTCAGATCAGTCATTCTGACCCCTTGGGAGAACTGTGGCTCAGCTGCCAGTTTGAAGACTTGCCAAATTCAGACAGTGAAACGGAGCTAGGGAAGAGTGTGGTCTTGAAGGATCTTCTCCCTTTACTTCGGCTCCCAAAACAACATGAAGTTTTCGAGTAATAATGGCTTGAAGAAACCTTAACCATCATTATTTCCACTTATCTAATTTTTAATTTTCTTTATTTTAAAATTGTATTTCCCAG
Seq C2 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTTATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGAGCAGCAGGATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.687
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(25.2=100),PF0028516=Citrate_synt=FE(21.3=100),PF145131=DAG_kinase_N=FE(22.6=100)
A:
NA
C2:
PF0028516=Citrate_synt=FE(20.6=100),PF145131=DAG_kinase_N=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: